Factsheet for Bra039309.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013270.1-P
Bra021027.1-P
Bra025716.1-P
Bra025717.1-P
Bra025718.1-P
Bra033121.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45850.1	Bra033121.1-P	AT4G12080.1	21798944
AT2G45850.1	Bra013270.1-P	AT4G17950.1	21798944
AT2G45850.1	Bra021027.1-P	AT4G17950.1	21798944
AT2G45850.1	Bra025716.1-P	AT4G17950.1	21798944
AT2G45850.1	Bra025717.1-P	AT4G17950.1	21798944
AT2G45850.1	Bra025718.1-P	AT4G17950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37070	Canola	nucleus	98.24	98.24
AT2G45850.1	Thale cress	nucleus	85.34	83.62
Bra007595.1-P	Field mustard	nucleus	67.74	67.74
Bra014444.1-P	Field mustard	nucleus	63.64	65.17
Bra003446.1-P	Field mustard	nucleus	59.53	59.88
KRH40471	Soybean	nucleus	53.96	53.96
KRH48165	Soybean	nucleus	53.37	53.53
KRH00715	Soybean	nucleus	53.67	53.51
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	53.96	53.33
KRH65066	Soybean	nucleus	52.49	52.65
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	48.68	49.85
GSMUA_Achr8P11400_001	Banana	nucleus	46.63	45.95
Solyc01g094460.2.1	Tomato	nucleus	45.45	45.72
PGSC0003DMT400000467	Potato	nucleus	45.45	45.72
GSMUA_Achr11P...	Banana	nucleus	49.27	44.8
GSMUA_Achr11P...	Banana	nucleus	46.92	43.13
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	23.46	40.82
Bra025511.1-P	Field mustard	nucleus	32.26	39.71
Bra027801.1-P	Field mustard	nucleus	43.11	39.2
Bra022946.1-P	Field mustard	nucleus	29.91	38.93
Bra027642.1-P	Field mustard	nucleus	43.4	38.85
HORVU2Hr1G123730.3	Barley	plastid	23.46	38.1
GSMUA_Achr4P30000_001	Banana	nucleus	36.07	37.73
TraesCS7A01G565900.1	Wheat	nucleus	33.43	37.13
Zm00001d018515_P002	Maize	nucleus	40.76	35.82
OQU85994	Sorghum	nucleus	40.47	34.41
Os02t0824300-01	Rice	nucleus	39.59	34.26
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	40.18	34.25
Bra013646.1-P	Field mustard	nucleus	29.33	32.79
Bra037321.1-P	Field mustard	nucleus	30.21	32.59
Bra033121.1-P	Field mustard	nucleus	29.33	32.26
Bra019359.1-P	Field mustard	nucleus	31.09	32.22
TraesCS2A01G582300.1	Wheat	nucleus	35.19	29.7
TraesCS2B01G604700.1	Wheat	nucleus	34.6	29.28
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	34.31	28.89
Bra025717.1-P	Field mustard	nucleus	25.51	28.71
TraesCS6B01G447600.1	Wheat	nucleus	39.59	28.66
Bra025716.1-P	Field mustard	nucleus	22.58	28.62
Zm00001d026652_P001	Maize	plastid	33.14	28.46
Bra021865.1-P	Field mustard	nucleus	29.03	28.29
Bra017536.1-P	Field mustard	nucleus	29.03	28.05
Bra021027.1-P	Field mustard	nucleus	33.14	27.56
KXG27470	Sorghum	nucleus	33.43	27.27
Os04t0683900-01	Rice	nucleus	32.84	26.73
TraesCS6A01G403700.1	Wheat	nucleus	41.35	26.55
Bra040133.1-P	Field mustard	nucleus	29.62	26.37
Bra020612.1-P	Field mustard	nucleus	26.98	26.14
Bra019174.1-P	Field mustard	nucleus	30.21	26.01
Bra013886.1-P	Field mustard	nucleus	29.03	25.98
Zm00001d001784_P002	Maize	nucleus	32.55	25.52
HORVU7Hr1G122340.3	Barley	nucleus	26.1	25.5
Bra029164.1-P	Field mustard	nucleus	31.67	25.47
Bra025718.1-P	Field mustard	nucleus, plastid	22.29	25.0
Bra028265.1-P	Field mustard	nucleus	31.38	24.94
Bra013270.1-P	Field mustard	nucleus	31.09	24.88
Bra009999.1-P	Field mustard	nucleus	26.98	24.73
Bra022555.1-P	Field mustard	nucleus	29.62	24.11
Bra035899.1-P	Field mustard	nucleus	27.27	23.72
Bra010070.1-P	Field mustard	nucleus	26.98	22.83
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	25.51	21.7

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra039309	EnsemblPlants:Bra039309.1	EnsemblPlants:Bra039309.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR005175	UniProt:M4FDY8	PFAM:PF03479	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF44	SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI0002544454
SEG:seg	:	:	:	:	:

Description

AT2G45850 (E=1e-118) | DNA-binding family protein

Coordinates

chrA04:-:18660151..18661830

Molecular Weight (calculated)

35908.5 Da

IEP (calculated)

10.450

GRAVY (calculated)

-0.462

Length

341 amino acids

Sequence
(BLAST)

001: MDQRDPMGLT GSGSYYIQRG LPGSVPPTFH GSSQQQQGLR HLHNQNSPFG SGSTGFGSPP LHGDPSPAAA TGAVPHHVGV HMISPPPPPP TSETPMKRKR
101: GRPRKYGQDG SVSLALSSSS VSTINSSNKR GRGRPPGSGK KQRLSSTGEL MMPSSSGMSF TPHVILVSIG EDIASKVIAF SQQGPRAICV LSASGAVSTA
201: TLLQSSTPPG AIQYEGRFEI LALSISYLVP TDGSFRNRTG NLSVSLASPD GRVIGGAIGG PLIAASPVQV IVGSFVWAAP KIKNKKREEE GSENVQDTND
301: HQALDHPVPQ QHTQGQNMMW STGSRQMDMR QAHADIDLMR G

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.