CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00715
KRH04046
KRH04337
KRH28286
KRH40471
KRH48165
KRH57315
KRH58200
KRH65066
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45850.1	KRH04046	AT4G12080.1	21798944
AT2G45850.1	KRH57315	AT4G12080.1	21798944
AT2G45850.1	KRH04337	AT4G17950.1	21798944
AT2G45850.1	KRH28286	AT4G17950.1	21798944
AT2G45850.1	KRH58200	AT4G17950.1	21798944
AT2G45850.1	KRH77206	AT4G17950.1	21798944
AT3G61310.1	KRH00715	AT2G45850.1	21798944
AT3G61310.1	KRH40471	AT2G45850.1	21798944
AT3G61310.1	KRH48165	AT2G45850.1	21798944
AT3G61310.1	KRH65066	AT2G45850.1	21798944
AT3G61310.1	KRH00715	AT3G61310.1	21798944
AT3G61310.1	KRH40471	AT3G61310.1	21798944
AT3G61310.1	KRH48165	AT3G61310.1	21798944
AT3G61310.1	KRH65066	AT3G61310.1	21798944
AT3G61310.1	KRH04046	AT4G12080.1	21798944
AT3G61310.1	KRH57315	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65066	Soybean	nucleus	95.59	95.59
KRH40471	Soybean	nucleus	84.41	84.16
KRH00715	Soybean	nucleus	83.53	83.04
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	71.76	70.72
PGSC0003DMT400000467	Potato	nucleus	60.88	61.06
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	59.71	60.96
Solyc01g094460.2.1	Tomato	nucleus	60.29	60.47
GSMUA_Achr8P11400_001	Banana	nucleus	56.18	55.2
KRH05193	Soybean	plastid	23.53	54.42
GSMUA_Achr11P...	Banana	nucleus	58.53	53.64
AT2G45850.1	Thale cress	nucleus	54.71	53.45
Bra039309.1-P	Field mustard	nucleus	53.53	53.37
CDY37070	Canola	nucleus	53.24	53.08
CDY27354	Canola	nucleus	54.12	52.72
CDY42495	Canola	nucleus	52.35	52.66
CDY48928	Canola	nucleus	53.24	52.62
Bra014444.1-P	Field mustard	nucleus	51.47	52.55
Bra007595.1-P	Field mustard	nucleus	52.65	52.49
GSMUA_Achr11P...	Banana	nucleus	57.65	52.27
AT3G61310.1	Thale cress	nucleus, plastid	54.41	52.26
CDX89109	Canola	nucleus	51.47	52.24
CDY58791	Canola	nucleus	49.71	51.52
CDX71746	Canola	nucleus	52.06	51.45
CDY51561	Canola	nucleus	50.59	50.59
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	29.12	50.51
Bra003446.1-P	Field mustard	nucleus	47.94	48.08
KRH27929	Soybean	nucleus	48.53	46.88
KRH59866	Soybean	nucleus	48.24	46.59
KRH77536	Soybean	nucleus	48.24	45.94
KRH41165	Soybean	nucleus	47.35	45.74
GSMUA_Achr4P30000_001	Banana	nucleus	42.65	44.48
HORVU2Hr1G123730.3	Barley	plastid	26.47	42.86
TraesCS7A01G565900.1	Wheat	nucleus	37.65	41.69
KRH57315	Soybean	nucleus	39.12	40.67
KRH04046	Soybean	nucleus	39.41	40.48
Zm00001d018515_P002	Maize	nucleus	46.18	40.46
OQU85994	Sorghum	nucleus	46.18	39.15
KRH76268	Soybean	cytosol, nucleus, plastid	39.71	39.02
KRH65263	Soybean	cytosol, nucleus, plastid	39.12	38.44
KRH34345	Soybean	nucleus	36.76	37.88
Os02t0824300-01	Rice	nucleus	43.82	37.82
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	44.41	37.75
KRG92455	Soybean	nucleus	35.88	36.97
KRH00569	Soybean	cytosol, peroxisome, plastid	36.18	36.39
KRH40594	Soybean	nucleus	35.59	35.91
KRH51558	Soybean	nucleus	37.06	35.49
KRH38723	Soybean	nucleus	35.0	34.59
KRH09229	Soybean	nucleus	35.0	34.59
KRH58200	Soybean	nucleus	36.47	34.25
KRH60876	Soybean	nucleus	35.59	33.89
KRH28286	Soybean	plastid	32.94	33.04
KRH20019	Soybean	nucleus	36.76	32.98
KRH04337	Soybean	nucleus	34.41	32.87
TraesCS2A01G582300.1	Wheat	nucleus	38.82	32.67
KRH77206	Soybean	nucleus	32.06	32.25
TraesCS6B01G447600.1	Wheat	nucleus	44.41	32.06
Zm00001d026652_P001	Maize	plastid	37.35	31.99
KRH68809	Soybean	nucleus	32.35	31.79
TraesCS2B01G604700.1	Wheat	nucleus	37.65	31.76
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	37.65	31.6
KRG97062	Soybean	nucleus	32.94	31.02
KXG27470	Sorghum	nucleus	37.35	30.38
Os04t0683900-01	Rice	nucleus	37.35	30.31
KRH32644	Soybean	plastid	35.0	30.05
TraesCS6A01G403700.1	Wheat	nucleus	45.29	29.0
HORVU7Hr1G122340.3	Barley	nucleus	29.71	28.94
Zm00001d001784_P002	Maize	nucleus	36.47	28.51
KRH25156	Soybean	cytosol	20.29	26.54
KRH30520	Soybean	nucleus	27.94	25.68

Protein Annotations

EntrezGene:100799791	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02004208	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_07G072300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	UniProt:I1KIC5	InterPro:IPR005175
EnsemblPlants:KRH48165	ProteinID:KRH48165	ProteinID:KRH48165.1	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31500	PANTHER:PTHR31500:SF44	SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI00023381DE	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:6560938..6567765

Molecular Weight (calculated)

34919.6 Da

IEP (calculated)

10.300

GRAVY (calculated)

-0.229

Length

340 amino acids

Sequence
(BLAST)

001: MDRGDQMTFP GSASYYMQRG IPGAGNQPEL HNSPNIRPLS NSNLPFQSSI GGGGTIGSTL PLESSGISAP CVNVSAPSGA VPGETVKRKR GRPRKYGPDG
101: AVSLALTPTP ASHPGALAQG QKRGRGRPPG SGKKQQLASL GELMSGSAGM GFTPHIITIA VGEDIATKIM AFSQQGPRAI CILSANGAVS TVTLRQPSTS
201: GGTVTYEGRF EIVCLSGSYL VADSGGTRNR TVALSVSLAS PDGRVIGGGV GGVLIAASPV QVILGSFSWG ASKTKIKKKE GSEGAEVAME TDHQTVHNPV
301: AVNSISPNQN LTPTSSLSPW PASRPLDMRN SHIDIDLMRG

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.