Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58791 | Canola | nucleus | 87.65 | 90.85 |
| Bra003446.1-P | Field mustard | nucleus | 85.0 | 85.25 |
| CDY42495 | Canola | nucleus | 76.47 | 76.92 |
| CDY48928 | Canola | nucleus | 77.35 | 76.45 |
| CDX89109 | Canola | nucleus | 75.29 | 76.42 |
| CDX71746 | Canola | nucleus | 76.47 | 75.58 |
| AT3G61310.1 | Thale cress | nucleus, plastid | 77.94 | 74.86 |
| CDY37070 | Canola | nucleus | 64.12 | 63.93 |
| CDY27354 | Canola | nucleus | 65.59 | 63.9 |
| VIT_15s0046g02930.t01 | Wine grape | nucleus, plastid | 52.94 | 52.17 |
| KRH65066 | Soybean | nucleus | 50.88 | 50.88 |
| KRH48165 | Soybean | nucleus | 50.59 | 50.59 |
| KRH40471 | Soybean | nucleus | 49.41 | 49.27 |
| KRH00715 | Soybean | nucleus | 48.82 | 48.54 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 46.18 | 47.15 |
| Solyc01g094460.2.1 | Tomato | nucleus | 44.71 | 44.84 |
| PGSC0003DMT400000467 | Potato | nucleus | 44.41 | 44.54 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 44.12 | 43.35 |
| GSMUA_Achr11P... | Banana | nucleus | 44.71 | 40.97 |
| GSMUA_Achr11P... | Banana | nucleus | 45.0 | 40.8 |
| CDY45364 | Canola | nucleus | 40.59 | 37.6 |
| CDY25500 | Canola | nucleus | 40.59 | 37.3 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 39.71 | 37.29 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 21.47 | 37.24 |
| HORVU2Hr1G123730.3 | Barley | plastid | 22.94 | 37.14 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 32.94 | 36.48 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 34.71 | 36.2 |
| Zm00001d018515_P002 | Maize | nucleus | 41.18 | 36.08 |
| CDY34355 | Canola | nucleus | 40.0 | 35.98 |
| OQU85994 | Sorghum | nucleus | 41.76 | 35.41 |
| CDX84679 | Canola | nucleus | 27.06 | 35.11 |
| Os02t0824300-01 | Rice | nucleus | 40.59 | 35.03 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 26.76 | 34.73 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 40.29 | 34.25 |
| CDY41028 | Canola | nucleus, plastid | 23.82 | 32.66 |
| CDX82971 | Canola | plastid | 20.59 | 32.56 |
| CDY39751 | Canola | nucleus | 36.47 | 32.46 |
| CDY46385 | Canola | nucleus | 35.88 | 31.94 |
| CDX98767 | Canola | nucleus | 30.0 | 31.0 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 29.71 | 30.7 |
| CDY04392 | Canola | nucleus | 24.12 | 30.6 |
| CDY01503 | Canola | cytosol | 23.24 | 30.5 |
| CDY47428 | Canola | nucleus | 27.65 | 30.42 |
| CDY41291 | Canola | nucleus | 27.06 | 30.16 |
| CDY26692 | Canola | nucleus | 26.47 | 29.7 |
| CDY07239 | Canola | plasma membrane | 20.0 | 29.44 |
| Zm00001d026652_P001 | Maize | plastid | 34.12 | 29.22 |
| CDY07238 | Canola | nucleus | 26.76 | 28.8 |
| CDY41027 | Canola | cytosol | 22.35 | 28.57 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 33.82 | 28.47 |
| CDY26694 | Canola | cytosol, plastid | 21.76 | 28.24 |
| CDY26693 | Canola | plastid | 22.35 | 28.15 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 33.24 | 28.04 |
| KXG27470 | Sorghum | nucleus | 34.41 | 27.99 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 38.53 | 27.81 |
| Os04t0683900-01 | Rice | nucleus | 34.12 | 27.68 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 32.94 | 27.65 |
| CDY03203 | Canola | nucleus | 29.12 | 27.65 |
| CDY68252 | Canola | nucleus | 24.12 | 27.61 |
| CDY35172 | Canola | nucleus | 28.24 | 27.2 |
| CDX78814 | Canola | nucleus | 32.06 | 26.78 |
| CDY26691 | Canola | cytosol, plastid | 24.12 | 26.37 |
| CDY08882 | Canola | nucleus | 33.53 | 26.21 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 40.59 | 25.99 |
| Zm00001d001784_P002 | Maize | nucleus | 33.24 | 25.98 |
| CDX76549 | Canola | nucleus | 33.53 | 25.91 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 26.47 | 25.79 |
| CDY44500 | Canola | nucleus | 31.76 | 25.71 |
| CDY37704 | Canola | nucleus | 28.24 | 25.6 |
| CDY01506 | Canola | nucleus | 22.65 | 25.58 |
| CDX94457 | Canola | nucleus | 28.24 | 25.4 |
| CDX89422 | Canola | nucleus | 28.53 | 25.26 |
| CDX92693 | Canola | nucleus | 29.41 | 25.25 |
| CDY49703 | Canola | nucleus | 29.41 | 25.06 |
| CDY52506 | Canola | nucleus | 25.29 | 24.64 |
| CDY30005 | Canola | nucleus | 27.35 | 24.41 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 28.53 | 24.37 |
| CDY21122 | Canola | nucleus | 27.65 | 24.35 |
| CDY38874 | Canola | nucleus | 30.29 | 24.35 |
| CDY16785 | Canola | nucleus | 27.94 | 24.23 |
| CDY00488 | Canola | nucleus | 30.29 | 24.01 |
| CDY05594 | Canola | nucleus | 25.0 | 23.88 |
| CDY32624 | Canola | nucleus | 29.71 | 23.82 |
| CDX87241 | Canola | nucleus | 27.35 | 23.79 |
| CDY65097 | Canola | nucleus | 28.82 | 23.39 |
| CDX99902 | Canola | nucleus | 30.0 | 23.23 |
| CDY00271 | Canola | nucleus | 27.35 | 23.08 |
| CDX86910 | Canola | nucleus | 27.06 | 23.06 |
| CDX91598 | Canola | nucleus | 28.24 | 22.91 |
| CDY52477 | Canola | nucleus | 24.41 | 22.55 |
| CDY65362 | Canola | nucleus | 24.41 | 22.31 |
| CDY30710 | Canola | nucleus | 25.88 | 21.95 |
| CDY13231 | Canola | nucleus | 23.24 | 19.27 |
Protein Annotations
| MapMan:35.1 | GO:A0A078INP0 | UniProt:A0A078INP0 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY51561 | ProteinID:CDY51561 |
| ProteinID:CDY51561.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00003746001 | InterPro:IPR005175 | PFAM:PF03479 | InterPro:PPC_dom |
| PFscan:PS51742 | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF44 | SMART:SM00384 | SUPFAM:SSF117856 | TMHMM:TMhelix |
| UniParc:UPI0004EECFB5 | SEG:seg | : | : | : | : |
Description
BnaCnng20900DBnaCnng20900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INP0]
Coordinates
chrLK033006:-:35496..37011
Molecular Weight (calculated)
35732.3 Da
IEP (calculated)
9.910
GRAVY (calculated)
-0.320
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQREAMALS GSGSYYIQRG MPGSAPPQTQ ASFYGLQGFQ HFSNPNSPFV PNLNQGGGST GLVSPPLPVE TSQVDSPTPV ALPPSGETFV KRKRGRPRKY
101: GQDGSVSLAL SPSVSSSSSM SPNSNKRGRG RPPCSGKKQR LSSIGGSLPS SSGMSFTPHV IAVSVGEDIA SKVVSFSQQS PRAICVLSVT GAVSTATILQ
201: PSPSQGAIKY EGRFELLTLS TSYPNATDND YPNRTVNLAV SLACPDFRVI GGGVGGPLIA ASSVQVIIGS FIWAIPKGKI KKRNEDVQET DALGDNTAAT
301: SPDVRQQSHN LVQTPAGMWS IGSRSMDMHH AHMDIDLMRG
101: GQDGSVSLAL SPSVSSSSSM SPNSNKRGRG RPPCSGKKQR LSSIGGSLPS SSGMSFTPHV IAVSVGEDIA SKVVSFSQQS PRAICVLSVT GAVSTATILQ
201: PSPSQGAIKY EGRFELLTLS TSYPNATDND YPNRTVNLAV SLACPDFRVI GGGVGGPLIA ASSVQVIIGS FIWAIPKGKI KKRNEDVQET DALGDNTAAT
301: SPDVRQQSHN LVQTPAGMWS IGSRSMDMHH AHMDIDLMRG
001: MDRRDAMALS GSGSYYIQRG IPGSGPPPPQ TQPTFHGSQG FHHFTNSISP FGSNPNPNPN PGGVSTGFVS PPLPVDSSPA DSSAAAAGAL VAPPSGDTSV
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG
Arabidopsis Description
AHL11AT-hook motif nuclear-localized protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.