Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025511.1-P | Field mustard | nucleus | 71.2 | 98.19 |
| CDY46385 | Canola | nucleus | 97.38 | 97.38 |
| CDY25500 | Canola | nucleus | 60.99 | 62.97 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 58.38 | 61.6 |
| CDY34355 | Canola | nucleus | 59.95 | 60.58 |
| CDY45364 | Canola | nucleus | 58.12 | 60.49 |
| AT1G63480.1 | Thale cress | nucleus | 56.28 | 59.56 |
| KRH05193 | Soybean | plastid | 20.42 | 53.06 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 45.03 | 49.71 |
| KRH27929 | Soybean | nucleus | 42.67 | 46.31 |
| KRH77536 | Soybean | nucleus | 42.41 | 45.38 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 39.27 | 45.05 |
| KRH41165 | Soybean | nucleus | 41.36 | 44.89 |
| Solyc08g008030.2.1 | Tomato | nucleus | 40.58 | 44.8 |
| PGSC0003DMT400014926 | Potato | plastid | 40.31 | 44.64 |
| KRH59866 | Soybean | nucleus | 41.1 | 44.6 |
| Solyc08g080960.2.1 | Tomato | nucleus | 38.74 | 44.31 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 36.65 | 40.46 |
| GSMUA_Achr11P... | Banana | nucleus | 38.74 | 39.89 |
| CDY48928 | Canola | nucleus | 35.34 | 39.24 |
| CDY42495 | Canola | nucleus | 34.55 | 39.05 |
| CDX71746 | Canola | nucleus | 35.08 | 38.95 |
| PGSC0003DMT400031843 | Potato | plastid | 38.74 | 38.54 |
| GSMUA_Achr11P... | Banana | nucleus | 37.43 | 38.13 |
| CDX89109 | Canola | nucleus | 33.25 | 37.91 |
| CDY37070 | Canola | nucleus | 33.51 | 37.54 |
| CDY58791 | Canola | nucleus | 31.94 | 37.2 |
| CDY27354 | Canola | nucleus | 33.77 | 36.96 |
| CDY51561 | Canola | nucleus | 32.46 | 36.47 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 18.59 | 36.22 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 30.63 | 35.89 |
| CDX84679 | Canola | nucleus | 23.56 | 34.35 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 23.56 | 34.35 |
| Zm00001d018515_P002 | Maize | nucleus | 33.77 | 33.25 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 26.18 | 32.57 |
| Os02t0824300-01 | Rice | nucleus | 33.25 | 32.23 |
| CDY04392 | Canola | nucleus | 22.51 | 32.09 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 33.51 | 32.0 |
| OQU85994 | Sorghum | nucleus | 33.51 | 31.92 |
| CDY47428 | Canola | nucleus | 25.13 | 31.07 |
| CDY07239 | Canola | plasma membrane | 18.59 | 30.74 |
| HORVU2Hr1G123730.3 | Barley | plastid | 16.49 | 30.0 |
| CDX98767 | Canola | nucleus | 25.65 | 29.79 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 25.65 | 29.79 |
| CDY01503 | Canola | cytosol | 20.16 | 29.73 |
| CDY07238 | Canola | nucleus | 24.35 | 29.43 |
| CDX82971 | Canola | plastid | 16.23 | 28.84 |
| CDY41291 | Canola | nucleus | 22.51 | 28.2 |
| CDY41028 | Canola | nucleus, plastid | 17.54 | 27.02 |
| CDY08882 | Canola | nucleus | 29.32 | 25.75 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 31.68 | 25.69 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 26.96 | 25.56 |
| CDX78814 | Canola | nucleus | 26.96 | 25.31 |
| Os04t0683900-01 | Rice | nucleus | 27.75 | 25.3 |
| CDX76549 | Canola | nucleus | 29.06 | 25.23 |
| CDY21122 | Canola | nucleus | 25.39 | 25.13 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 26.44 | 25.0 |
| CDY35172 | Canola | nucleus | 23.04 | 24.93 |
| CDY26693 | Canola | plastid | 17.54 | 24.81 |
| CDY41027 | Canola | cytosol | 17.28 | 24.81 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 26.18 | 24.69 |
| CDY30005 | Canola | nucleus | 24.61 | 24.67 |
| CDY37704 | Canola | nucleus | 24.08 | 24.53 |
| CDY44500 | Canola | nucleus | 26.96 | 24.52 |
| CDY16785 | Canola | nucleus | 25.13 | 24.49 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 34.03 | 24.48 |
| CDY26692 | Canola | nucleus | 19.37 | 24.42 |
| CDY52506 | Canola | nucleus | 22.25 | 24.36 |
| CDY03203 | Canola | nucleus | 22.77 | 24.3 |
| CDX87241 | Canola | nucleus | 24.61 | 24.04 |
| CDY38874 | Canola | nucleus | 26.44 | 23.88 |
| CDY05594 | Canola | nucleus | 22.25 | 23.88 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 24.87 | 23.87 |
| CDX94457 | Canola | nucleus | 23.56 | 23.81 |
| CDX92693 | Canola | nucleus | 24.61 | 23.74 |
| Zm00001d026652_P001 | Maize | plastid | 24.61 | 23.68 |
| CDY26694 | Canola | cytosol, plastid | 16.23 | 23.66 |
| CDY65097 | Canola | nucleus | 25.92 | 23.63 |
| CDY00271 | Canola | nucleus | 24.87 | 23.57 |
| CDX86910 | Canola | nucleus | 24.61 | 23.56 |
| CDY49703 | Canola | nucleus | 24.61 | 23.56 |
| CDY00488 | Canola | nucleus | 26.44 | 23.54 |
| KXG27470 | Sorghum | nucleus | 25.65 | 23.45 |
| CDY32624 | Canola | nucleus | 25.92 | 23.35 |
| CDY65362 | Canola | nucleus | 22.51 | 23.12 |
| CDY52477 | Canola | nucleus | 22.25 | 23.1 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 20.94 | 22.92 |
| CDX89422 | Canola | nucleus | 23.04 | 22.92 |
| CDX91598 | Canola | nucleus | 25.13 | 22.91 |
| CDY68252 | Canola | nucleus | 17.8 | 22.9 |
| CDX99902 | Canola | nucleus | 25.92 | 22.55 |
| CDY30710 | Canola | nucleus | 23.3 | 22.19 |
| CDY26691 | Canola | cytosol, plastid | 17.8 | 21.86 |
| CDY01506 | Canola | nucleus | 16.75 | 21.26 |
| Zm00001d001784_P002 | Maize | nucleus | 23.82 | 20.92 |
| CDY13231 | Canola | nucleus | 21.47 | 20.0 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | GO:A0A078HQ53 | UniProt:A0A078HQ53 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY39751 |
| ProteinID:CDY39751 | ProteinID:CDY39751.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00068542001 | InterPro:IPR005175 | PFAM:PF03479 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF9 | SMART:SM00384 | SUPFAM:SSF117856 |
| TMHMM:TMhelix | UniParc:UPI0004EEADF9 | SEG:seg | : | : | : |
Description
BnaA04g11020DBnaA04g11020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ53]
Coordinates
chrLK032456:+:276380..278990
Molecular Weight (calculated)
40597.6 Da
IEP (calculated)
9.442
GRAVY (calculated)
-0.574
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGREAMPF PPPFYFPRGP FSSQSASAIH APPGFRPMSN PNLQQQQQHQ FPLGEQRHHQ DFSHGIHMGM AAAASSSSPT MQQPPPIPTP PPHHSVAAAA
101: AEEPMMVKKK RGRPRKYVPD NNEGCDLELS PMQSLQKPNI SSPVSDPNAP KRARGRPPGT GRKQRLANLG EWMNTSAGFA FATHVISVEA GEDIVSKVLS
201: FSQQRPRALC IMSGTGTASA FTLRQTGSSA PTLSFQGHFD ILSVQGCYLV NEEGGSKSRT GGISVSLSRH DGFLIGGTVG TLIAASLVQV VACSFVYGSA
301: KAKVIKQESG SKEDNTTKKE SSLETPASEQ QRSPRATESA AEAAQTPLDY SSPGWAGPGG GGSRTTDSRN NNHLTDIDLT RG
101: AEEPMMVKKK RGRPRKYVPD NNEGCDLELS PMQSLQKPNI SSPVSDPNAP KRARGRPPGT GRKQRLANLG EWMNTSAGFA FATHVISVEA GEDIVSKVLS
201: FSQQRPRALC IMSGTGTASA FTLRQTGSSA PTLSFQGHFD ILSVQGCYLV NEEGGSKSRT GGISVSLSRH DGFLIGGTVG TLIAASLVQV VACSFVYGSA
301: KAKVIKQESG SKEDNTTKKE SSLETPASEQ QRSPRATESA AEAAQTPLDY SSPGWAGPGG GGSRTTDSRN NNHLTDIDLT RG
001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
Arabidopsis Description
AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.