CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00715
KRH40471
KRH48165
KRH65066

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	KRH00715	AT3G61310.1	21798944
AT1G63480.1	KRH40471	AT3G61310.1	21798944
AT1G63480.1	KRH48165	AT3G61310.1	21798944
AT1G63480.1	KRH65066	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77536	Soybean	nucleus	94.03	92.72
KRH05193	Soybean	plastid	29.26	70.07
KRH59866	Soybean	nucleus	67.9	67.9
KRH41165	Soybean	nucleus	66.76	66.76
VIT_02s0025g03580.t01	Wine grape	nucleus	58.81	59.83
PGSC0003DMT400014926	Potato	plastid	52.84	53.91
Solyc08g008030.2.1	Tomato	nucleus	52.56	53.47
Solyc08g080960.2.1	Tomato	nucleus	50.57	53.29
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	47.73	50.45
CDY25500	Canola	nucleus	52.84	50.27
AT1G63470.1	Thale cress	nucleus	53.69	50.0
CDY64088	Canola	nucleus, plasma membrane, plastid	51.42	50.0
CDY45364	Canola	nucleus	51.42	49.32
KRH40471	Soybean	nucleus	47.73	49.27
KRH00715	Soybean	nucleus	47.73	49.12
Bra027642.1-P	Field mustard	nucleus	53.12	49.08
KRH48165	Soybean	nucleus	46.88	48.53
Bra027801.1-P	Field mustard	nucleus	51.42	48.27
AT1G63480.1	Thale cress	nucleus	49.43	48.2
KRH65066	Soybean	nucleus	46.31	47.94
Bra025511.1-P	Field mustard	nucleus	37.5	47.65
CDY34355	Canola	nucleus	50.85	47.35
PGSC0003DMT400031843	Potato	plastid	51.42	47.14
GSMUA_Achr8P11400_001	Banana	nucleus	46.31	47.11
GSMUA_Achr11P...	Banana	nucleus	48.01	45.07
GSMUA_Achr11P...	Banana	nucleus	47.44	45.01
CDY39751	Canola	nucleus	46.31	42.67
CDY46385	Canola	nucleus	46.02	42.41
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	23.01	41.33
GSMUA_Achr4P30000_001	Banana	nucleus	37.22	40.18
Zm00001d018515_P002	Maize	nucleus	43.18	39.18
HORVU2Hr1G123730.3	Barley	plastid	23.3	39.05
KRH57315	Soybean	nucleus	35.23	37.92
KRH04046	Soybean	nucleus	35.51	37.76
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	42.9	37.75
Os02t0824300-01	Rice	nucleus	41.76	37.31
OQU85994	Sorghum	nucleus	42.05	36.91
KRH40594	Soybean	nucleus	34.09	35.61
TraesCS7A01G565900.1	Wheat	nucleus	30.97	35.5
KRH00569	Soybean	cytosol, peroxisome, plastid	34.09	35.5
KRH65263	Soybean	cytosol, nucleus, plastid	34.38	34.97
KRH76268	Soybean	cytosol, nucleus, plastid	34.38	34.97
KRH34345	Soybean	nucleus	31.82	33.94
KRH51558	Soybean	nucleus	33.52	33.24
KRH60876	Soybean	nucleus	33.24	32.77
KRG92455	Soybean	nucleus	30.68	32.73
KRH38723	Soybean	nucleus	31.82	32.56
KRH09229	Soybean	nucleus	31.82	32.56
KRH58200	Soybean	nucleus	32.67	31.77
Os04t0683900-01	Rice	nucleus	36.93	31.03
TraesCS2B01G604700.1	Wheat	nucleus	35.51	31.02
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	35.51	30.86
TraesCS6B01G447600.1	Wheat	nucleus	41.19	30.79
TraesCS2A01G582300.1	Wheat	nucleus	34.94	30.45
Zm00001d026652_P001	Maize	plastid	33.52	29.72
KRH20019	Soybean	nucleus	31.82	29.55
KRH04337	Soybean	nucleus	29.83	29.49
KXG27470	Sorghum	nucleus	34.38	28.95
KRH68809	Soybean	nucleus	28.12	28.61
TraesCS6A01G403700.1	Wheat	nucleus	42.9	28.44
KRH28286	Soybean	plastid	26.99	28.02
KRG97062	Soybean	nucleus	28.69	27.98
KRH77206	Soybean	nucleus	26.42	27.51
KRH32644	Soybean	plastid	30.4	27.02
Zm00001d001784_P002	Maize	nucleus	31.53	25.52
KRH25156	Soybean	cytosol	18.47	25.0
KRH30520	Soybean	nucleus	25.57	24.32
HORVU7Hr1G122340.3	Barley	nucleus	23.01	23.21

Protein Annotations

EntrezGene:100790569	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02006735	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_11G023900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	UniProt:I1LGG0	InterPro:IPR005175
EnsemblPlants:KRH27929	ProteinID:KRH27929	ProteinID:KRH27929.1	PFAM:PF03479	InterPro:PPC_dom	PRINTS:PR00929
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	SUPFAM:SSF117856	UniParc:UPI000233C866	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:1720878..1725368

Molecular Weight (calculated)

35950.1 Da

IEP (calculated)

10.424

GRAVY (calculated)

-0.429

Length

352 amino acids

Sequence
(BLAST)

001: MDGREGMAFP GGSAPYYMQH RGGGVGGSVP GTGTQSGGFQ PPSGFRALSN VSPGSAFKVE SQPQHASFSH GINTGSSPDG GSGVPSSGEP VKKKRGRPRK
101: YGPDGSVSLM LSPMSATANS TPGSGTSSEK RPRGRPPGSG RKQQLATLGE WMNNSAGLAF SPHVITVGVG EDIVAKLLSF ARQRPRAVCI LTGTGTISSV
201: TLRQPASTSI SVTYEGRFQI LCLSGSYLVA EEGGPHNRTG GMSVSLSSPD GHIIGGGVTR LVAASPVQVV ACSFVYGGSK PKTKEVTTTT TTTKDSSSEP
301: QSSDKLASPA SAPPPNQNYT SSSPSPGIWP ASSRPVEVKS AHPHTGIDLT RG

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.