Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G403700.1 | Wheat | nucleus | 92.57 | 82.11 |
| Os02t0824300-01 | Rice | nucleus | 61.78 | 73.86 |
| Zm00001d018515_P002 | Maize | nucleus | 59.45 | 72.16 |
| OQU85994 | Sorghum | nucleus | 60.72 | 71.32 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 56.69 | 66.75 |
| VIT_15s0046g02930.t01 | Wine grape | nucleus, plastid | 34.82 | 47.54 |
| KRH05193 | Soybean | plastid | 14.65 | 46.94 |
| KRH48165 | Soybean | nucleus | 32.06 | 44.41 |
| KRH65066 | Soybean | nucleus | 32.06 | 44.41 |
| KRH40471 | Soybean | nucleus | 32.06 | 44.28 |
| KRH00715 | Soybean | nucleus | 31.85 | 43.86 |
| Solyc01g094460.2.1 | Tomato | nucleus | 30.79 | 42.77 |
| PGSC0003DMT400000467 | Potato | nucleus | 30.79 | 42.77 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 31.21 | 42.49 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 30.57 | 41.26 |
| KRH27929 | Soybean | nucleus | 30.79 | 41.19 |
| PGSC0003DMT400014926 | Potato | plastid | 30.15 | 41.16 |
| Bra014444.1-P | Field mustard | nucleus | 29.09 | 41.14 |
| Solyc08g080960.2.1 | Tomato | nucleus | 29.09 | 41.02 |
| Solyc08g008030.2.1 | Tomato | nucleus | 29.94 | 40.75 |
| KRH77536 | Soybean | nucleus | 30.36 | 40.06 |
| CDX89109 | Canola | nucleus | 28.45 | 40.0 |
| CDY42495 | Canola | nucleus | 28.66 | 39.94 |
| AT2G45850.1 | Thale cress | nucleus | 29.3 | 39.66 |
| Bra039309.1-P | Field mustard | nucleus | 28.66 | 39.59 |
| CDY37070 | Canola | nucleus | 28.45 | 39.3 |
| Bra025511.1-P | Field mustard | nucleus | 22.93 | 38.99 |
| CDY27354 | Canola | nucleus | 28.66 | 38.68 |
| CDY51561 | Canola | nucleus | 27.81 | 38.53 |
| CDY58791 | Canola | nucleus | 26.75 | 38.41 |
| KRH59866 | Soybean | nucleus | 28.45 | 38.07 |
| KRH41165 | Soybean | nucleus | 28.24 | 37.78 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 28.66 | 37.29 |
| Bra007595.1-P | Field mustard | nucleus | 26.96 | 37.24 |
| CDY48928 | Canola | nucleus | 27.18 | 37.21 |
| CDY25500 | Canola | nucleus | 29.09 | 37.03 |
| CDX71746 | Canola | nucleus | 26.75 | 36.63 |
| CDY34355 | Canola | nucleus | 29.3 | 36.51 |
| Bra027642.1-P | Field mustard | nucleus | 29.51 | 36.48 |
| AT3G61310.1 | Thale cress | nucleus, plastid | 27.39 | 36.44 |
| CDY45364 | Canola | nucleus | 28.24 | 36.24 |
| TraesCS7B01G143000.1 | Wheat | nucleus | 27.39 | 35.73 |
| Bra027801.1-P | Field mustard | nucleus | 28.24 | 35.47 |
| AT1G63470.1 | Thale cress | nucleus | 28.45 | 35.45 |
| PGSC0003DMT400031843 | Potato | plastid | 28.66 | 35.16 |
| Bra003446.1-P | Field mustard | nucleus | 25.27 | 35.1 |
| AT1G63480.1 | Thale cress | nucleus | 26.54 | 34.63 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 28.45 | 32.52 |
| CDY39751 | Canola | nucleus | 25.69 | 31.68 |
| CDY46385 | Canola | nucleus | 25.27 | 31.15 |
| TraesCS5B01G130400.1 | Wheat | plastid | 23.99 | 30.71 |
| TraesCS5B01G129200.1 | Wheat | plastid | 23.35 | 29.97 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 25.48 | 29.78 |
| TraesCS5B01G266600.1 | Wheat | endoplasmic reticulum, mitochondrion, nucleus, peroxisome | 24.42 | 29.11 |
| TraesCS7B01G215600.1 | Wheat | plastid | 23.99 | 28.68 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 26.96 | 28.16 |
| TraesCS7B01G035400.1 | Wheat | cytosol | 11.68 | 27.5 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 22.72 | 27.37 |
| TraesCS7B01G035900.1 | Wheat | nucleus | 19.11 | 24.79 |
| TraesCS5B01G266500.1 | Wheat | cytosol | 0.42 | 1.71 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G447600.1 | EnsemblPlantsGene:TraesCS6B01G447600 | Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | ncoils:Coil | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF41 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SMART:SM00384 | SUPFAM:SSF117856 |
| TIGR:cd11378 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:708023657..708027314
Molecular Weight (calculated)
47826.0 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.600
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRESTATS GPNYSQHMTQ HSVGGGGGGS QHMAQHSVGG GGGSQHMAQH SAGGGGGGGG SQHMAQHSAG GGGGGTQHMV QHNAGGGADG GMDIVMGVVA
101: LSGDAKGDQG GEAGQDEQVK KKRGRPRKYK PDGSVTLGLS PSPSTPHSSS PGMGAMVTIP GSGFGPGTGS GGSGSGALTE KRGRGRPPGS GKMQQLASLG
201: KWFLGSVGTG FTPHVIIISA GEDVAARIMS FSQQGPRAIC IISATGAVST ATLHQDSDSG AVTYEGRFEI LCLSGSYLVV EEGGTRTRSG GLCIALCGPD
301: HRVIGGSVSG VLTAAGTVQV IVGSFMYGGG SKKNKGKADQ DMENEEQNGG GEETPTLALP EHPHNMLPHP MSGWPPGLMN QMDPRASPMY GSSSKQQNKT
401: KAEQEMEDEE RNGGGGGGGE EPLTMAHPED NMDPEHNMNM PPPHPMGGWQ PGLMRQMDSR SSSIDINSIR E
101: LSGDAKGDQG GEAGQDEQVK KKRGRPRKYK PDGSVTLGLS PSPSTPHSSS PGMGAMVTIP GSGFGPGTGS GGSGSGALTE KRGRGRPPGS GKMQQLASLG
201: KWFLGSVGTG FTPHVIIISA GEDVAARIMS FSQQGPRAIC IISATGAVST ATLHQDSDSG AVTYEGRFEI LCLSGSYLVV EEGGTRTRSG GLCIALCGPD
301: HRVIGGSVSG VLTAAGTVQV IVGSFMYGGG SKKNKGKADQ DMENEEQNGG GEETPTLALP EHPHNMLPHP MSGWPPGLMN QMDPRASPMY GSSSKQQNKT
401: KAEQEMEDEE RNGGGGGGGE EPLTMAHPED NMDPEHNMNM PPPHPMGGWQ PGLMRQMDSR SSSIDINSIR E
001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG
Arabidopsis Description
AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.