Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37070 | Canola | nucleus | 95.42 | 97.65 |
| AT2G45850.1 | Thale cress | nucleus | 86.25 | 86.49 |
| CDY48928 | Canola | nucleus | 68.19 | 69.19 |
| CDY42495 | Canola | nucleus | 66.48 | 68.64 |
| CDX71746 | Canola | nucleus | 66.48 | 67.44 |
| CDX89109 | Canola | nucleus | 63.9 | 66.57 |
| CDY58791 | Canola | nucleus | 62.18 | 66.16 |
| CDY51561 | Canola | nucleus | 63.9 | 65.59 |
| KRH40471 | Soybean | nucleus | 53.58 | 54.84 |
| KRH00715 | Soybean | nucleus | 53.3 | 54.39 |
| KRH48165 | Soybean | nucleus | 52.72 | 54.12 |
| VIT_15s0046g02930.t01 | Wine grape | nucleus, plastid | 53.01 | 53.62 |
| KRH65066 | Soybean | nucleus | 52.15 | 53.53 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 48.14 | 50.45 |
| PGSC0003DMT400000467 | Potato | nucleus | 44.99 | 46.31 |
| Solyc01g094460.2.1 | Tomato | nucleus | 44.99 | 46.31 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 45.85 | 46.24 |
| GSMUA_Achr11P... | Banana | nucleus | 48.42 | 45.07 |
| GSMUA_Achr11P... | Banana | nucleus | 46.7 | 43.94 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 23.21 | 41.33 |
| CDX84679 | Canola | nucleus | 30.09 | 40.08 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 30.09 | 40.08 |
| CDY45364 | Canola | nucleus | 41.83 | 39.78 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 41.26 | 39.78 |
| CDY25500 | Canola | nucleus | 41.83 | 39.46 |
| HORVU2Hr1G123730.3 | Barley | plastid | 22.92 | 38.1 |
| CDY34355 | Canola | nucleus | 40.97 | 37.83 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 35.24 | 37.73 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 32.95 | 37.46 |
| Zm00001d018515_P002 | Maize | nucleus | 40.11 | 36.08 |
| CDX82971 | Canola | plastid | 21.78 | 35.35 |
| OQU85994 | Sorghum | nucleus | 39.83 | 34.66 |
| Os02t0824300-01 | Rice | nucleus | 38.97 | 34.52 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 39.54 | 34.5 |
| CDY04392 | Canola | nucleus | 26.36 | 34.33 |
| CDY07239 | Canola | plasma membrane | 22.64 | 34.2 |
| CDY01503 | Canola | cytosol | 25.21 | 33.98 |
| CDY46385 | Canola | nucleus | 36.96 | 33.77 |
| CDY39751 | Canola | nucleus | 36.96 | 33.77 |
| CDY47428 | Canola | nucleus | 29.8 | 33.66 |
| CDY41291 | Canola | nucleus | 29.23 | 33.44 |
| CDX98767 | Canola | nucleus | 31.23 | 33.13 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 30.95 | 32.83 |
| CDY07238 | Canola | nucleus | 29.51 | 32.59 |
| CDY41028 | Canola | nucleus, plastid | 21.78 | 30.65 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 34.67 | 29.95 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 34.1 | 29.53 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 33.81 | 29.14 |
| CDY26692 | Canola | nucleus | 25.21 | 29.04 |
| Zm00001d026652_P001 | Maize | plastid | 32.95 | 28.97 |
| CDY26693 | Canola | plastid | 22.35 | 28.89 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 38.68 | 28.66 |
| CDY26694 | Canola | cytosol, plastid | 21.2 | 28.24 |
| CDY03203 | Canola | nucleus | 28.94 | 28.21 |
| CDY41027 | Canola | cytosol | 21.49 | 28.2 |
| CDY35172 | Canola | nucleus | 28.37 | 28.05 |
| KXG27470 | Sorghum | nucleus | 33.24 | 27.75 |
| CDY68252 | Canola | nucleus | 23.21 | 27.27 |
| Os04t0683900-01 | Rice | nucleus | 32.66 | 27.21 |
| CDY37704 | Canola | nucleus | 29.23 | 27.2 |
| CDY08882 | Canola | nucleus | 33.52 | 26.9 |
| CDX78814 | Canola | nucleus | 31.23 | 26.78 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 40.69 | 26.74 |
| CDY21122 | Canola | nucleus | 29.51 | 26.68 |
| CDY52506 | Canola | nucleus | 26.65 | 26.65 |
| CDX76549 | Canola | nucleus | 33.52 | 26.59 |
| CDY30005 | Canola | nucleus | 28.94 | 26.51 |
| CDX92693 | Canola | nucleus | 29.51 | 26.01 |
| Zm00001d001784_P002 | Maize | nucleus | 32.38 | 25.98 |
| CDY44500 | Canola | nucleus | 31.23 | 25.95 |
| CDX94457 | Canola | nucleus | 28.08 | 25.93 |
| CDY01506 | Canola | nucleus | 22.35 | 25.91 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 29.51 | 25.88 |
| CDY05594 | Canola | nucleus | 26.36 | 25.84 |
| CDY49703 | Canola | nucleus | 29.51 | 25.81 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 25.79 | 25.79 |
| CDX89422 | Canola | nucleus | 28.37 | 25.78 |
| CDY26691 | Canola | cytosol, plastid | 22.64 | 25.4 |
| CDY38874 | Canola | nucleus | 30.66 | 25.3 |
| CDY32624 | Canola | nucleus | 30.37 | 25.0 |
| CDY00488 | Canola | nucleus | 30.66 | 24.94 |
| CDY65362 | Canola | nucleus | 26.07 | 24.46 |
| CDY52477 | Canola | nucleus | 25.79 | 24.46 |
| CDY65097 | Canola | nucleus | 29.23 | 24.34 |
| CDX99902 | Canola | nucleus | 30.37 | 24.15 |
| CDX91598 | Canola | nucleus | 28.94 | 24.11 |
| CDY16785 | Canola | nucleus | 26.93 | 23.98 |
| CDX87241 | Canola | nucleus | 26.65 | 23.79 |
| CDX86910 | Canola | nucleus | 26.65 | 23.31 |
| CDY00271 | Canola | nucleus | 26.65 | 23.08 |
| CDY30710 | Canola | nucleus | 25.79 | 22.44 |
| CDY13231 | Canola | nucleus | 24.64 | 20.98 |
Protein Annotations
| EnsemblPlants:CDY27354 | EnsemblPlantsGene:GSBRNA2T00037291001 | Gene3D:3.30.1330.80 | GO:A0A078GQ72 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF44 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY27354 | ProteinID:CDY27354.1 | SEG:seg |
| SMART:SM00384 | SUPFAM:SSF117856 | UniParc:UPI0004EE1AE5 | UniProt:A0A078GQ72 | MapMan:35.1 | : |
Description
BnaC04g50510DBnaC04g50510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ72]
Coordinates
chrLK032203:+:222927..225387
Molecular Weight (calculated)
36625.3 Da
IEP (calculated)
10.450
GRAVY (calculated)
-0.455
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQRDPMGLT GSGSYYIQRG LPGSVPPTFH GSSQQQQGLR HLHNPNSPFG SGSTGFGSPP LHGDPSPAAA ATGAVPHHVG VHMISPPPPP PPTSETPMKR
101: KRGRPRKYGQ DGSVSLALSS SSVSTINSSN KRGRGRPPGS GKKQRLSSTG ELMMPSSSGM SFTPHVILVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLLQSSSP PGAIQYEGRF EILALSISYL VPTDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKNKKRE EEGSENVQDT
301: NDHQALDNNN NTVSPVPQQH TQGQNLIWST GSRQMDMRHA HADIDLMRG
101: KRGRPRKYGQ DGSVSLALSS SSVSTINSSN KRGRGRPPGS GKKQRLSSTG ELMMPSSSGM SFTPHVILVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLLQSSSP PGAIQYEGRF EILALSISYL VPTDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKNKKRE EEGSENVQDT
301: NDHQALDNNN NTVSPVPQQH TQGQNLIWST GSRQMDMRHA HADIDLMRG
001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG
Arabidopsis Description
AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.