Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025718.1-P | Field mustard | nucleus, plastid | 95.82 | 98.03 |
| CDY68252 | Canola | nucleus | 82.96 | 86.87 |
| CDY41028 | Canola | nucleus, plastid | 58.84 | 73.79 |
| CDY26692 | Canola | nucleus | 71.06 | 72.94 |
| CDY41027 | Canola | cytosol | 60.77 | 71.05 |
| CDY26693 | Canola | plastid | 59.16 | 68.15 |
| CDY26694 | Canola | cytosol, plastid | 57.23 | 67.94 |
| CDY01506 | Canola | nucleus | 47.91 | 49.5 |
| CDY01503 | Canola | cytosol | 39.87 | 47.88 |
| CDX78814 | Canola | nucleus | 54.34 | 41.52 |
| CDY44500 | Canola | nucleus | 54.98 | 40.71 |
| CDY08882 | Canola | nucleus | 55.31 | 39.54 |
| CDX76549 | Canola | nucleus | 55.63 | 39.32 |
| AT4G17950.1 | Thale cress | nucleus | 54.98 | 38.95 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 20.58 | 33.68 |
| CDY03203 | Canola | nucleus | 37.62 | 32.68 |
| Os10t0572900-02 | Rice | nucleus | 26.37 | 32.67 |
| CDY35172 | Canola | nucleus | 36.98 | 32.58 |
| Solyc04g053090.1.1 | Tomato | plastid | 17.04 | 31.36 |
| CDY07239 | Canola | plasma membrane | 22.83 | 30.74 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 34.41 | 30.31 |
| CDX84679 | Canola | nucleus | 25.4 | 30.15 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 25.4 | 30.15 |
| Solyc04g053100.1.1 | Tomato | plastid | 15.76 | 29.52 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 17.36 | 28.57 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 27.97 | 28.34 |
| PGSC0003DMT400052826 | Potato | nucleus | 31.83 | 27.5 |
| KRH58200 | Soybean | nucleus | 31.83 | 27.35 |
| KRH04337 | Soybean | nucleus | 30.87 | 26.97 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 30.23 | 26.7 |
| OQU82226 | Sorghum | plastid | 29.58 | 26.51 |
| Os04t0589900-01 | Rice | nucleus | 32.15 | 26.39 |
| KRH28286 | Soybean | plastid | 28.62 | 26.25 |
| KRH77206 | Soybean | nucleus | 27.97 | 25.74 |
| CDY07238 | Canola | nucleus | 26.05 | 25.63 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 29.26 | 25.49 |
| CDY42495 | Canola | nucleus | 27.01 | 24.85 |
| CDX71746 | Canola | nucleus | 27.01 | 24.42 |
| CDY48928 | Canola | nucleus | 27.01 | 24.42 |
| CDY58791 | Canola | nucleus | 25.72 | 24.39 |
| CDY47428 | Canola | nucleus | 24.12 | 24.27 |
| CDX89109 | Canola | nucleus | 26.05 | 24.18 |
| TraesCS2A01G449500.1 | Wheat | plastid | 31.83 | 24.15 |
| Zm00001d026036_P001 | Maize | nucleus | 31.19 | 24.13 |
| CDY51561 | Canola | nucleus | 26.37 | 24.12 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 31.83 | 24.03 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 31.51 | 23.79 |
| CDY37070 | Canola | nucleus | 25.4 | 23.17 |
| CDY04392 | Canola | nucleus | 19.94 | 23.13 |
| CDX98767 | Canola | nucleus | 24.44 | 23.1 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 24.12 | 22.8 |
| Solyc08g006950.2.1 | Tomato | nucleus | 28.62 | 22.76 |
| CDY27354 | Canola | nucleus | 25.4 | 22.64 |
| Zm00001d030053_P003 | Maize | plastid | 30.23 | 22.54 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 30.87 | 22.38 |
| CDY41291 | Canola | nucleus | 21.86 | 22.3 |
| CDY37704 | Canola | nucleus | 26.69 | 22.13 |
| KXG38867 | Sorghum | plastid | 29.9 | 21.99 |
| CDY52506 | Canola | nucleus | 24.44 | 21.78 |
| CDY05594 | Canola | nucleus | 24.76 | 21.63 |
| CDY21122 | Canola | nucleus | 26.69 | 21.5 |
| CDY30005 | Canola | nucleus | 26.05 | 21.26 |
| CDY65362 | Canola | nucleus | 25.4 | 21.24 |
| CDY52477 | Canola | nucleus | 25.08 | 21.2 |
| CDY25500 | Canola | nucleus | 24.76 | 20.81 |
| CDX94457 | Canola | nucleus | 25.08 | 20.63 |
| CDX82971 | Canola | plastid | 14.15 | 20.47 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 29.58 | 20.4 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 26.05 | 20.35 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 29.58 | 20.26 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 29.58 | 20.26 |
| CDY34355 | Canola | nucleus | 24.44 | 20.11 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 29.58 | 19.83 |
| CDX89422 | Canola | nucleus | 24.44 | 19.79 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 22.83 | 19.61 |
| CDX92693 | Canola | nucleus | 24.76 | 19.44 |
| CDX87241 | Canola | nucleus | 24.44 | 19.44 |
| CDY16785 | Canola | nucleus | 24.44 | 19.39 |
| CDY45364 | Canola | nucleus | 22.83 | 19.35 |
| CDX86910 | Canola | nucleus | 24.76 | 19.3 |
| CDY49703 | Canola | nucleus | 24.76 | 19.3 |
| CDY00271 | Canola | nucleus | 24.76 | 19.11 |
| CDY30710 | Canola | nucleus | 23.79 | 18.45 |
| CDY38874 | Canola | nucleus | 25.08 | 18.44 |
| CDY65097 | Canola | nucleus | 24.76 | 18.38 |
| CDY00488 | Canola | nucleus | 25.08 | 18.18 |
| CDY13231 | Canola | nucleus | 23.79 | 18.05 |
| CDY32624 | Canola | nucleus | 24.44 | 17.92 |
| CDX91598 | Canola | nucleus | 24.12 | 17.9 |
| CDY39751 | Canola | nucleus | 21.86 | 17.8 |
| CDY46385 | Canola | nucleus | 21.86 | 17.8 |
| CDX99902 | Canola | nucleus | 25.08 | 17.77 |
Protein Annotations
| EnsemblPlants:CDY26691 | EnsemblPlantsGene:GSBRNA2T00035587001 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 | PFAM:PF03479 |
| PFscan:PS51742 | ProteinID:CDY26691 | ProteinID:CDY26691.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EDC202 |
| UniProt:A0A078GMX7 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g13310DBnaA06g13310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMX7]
Coordinates
chrLK032193:+:161510..162807
Molecular Weight (calculated)
32333.0 Da
IEP (calculated)
7.505
GRAVY (calculated)
-0.448
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKEIHQQQ QQQNRNAADA LAGPTAPSQA MHNRPSVGAL SLRQPQPRQA VMLDGSPYPV VAERRWRQLG IKERDAPPDV NVNVHDGGDS GGGANAGPPA
101: KRKGRPLGSR DKQPRKASVG GGGGGGGPLT AHVINVNAGE DIAIKLVEFM KQEPREVCIL SASGVVSIAV VQSDNPLGFV KYEGLYVITD LSGTFWNTES
201: NDGGATVTRT GNLRVSLAGP DCKVVCGCVC GMLVAGSQVE VTVGTFVREG VKLSSASAPA NVSSLTGGGG PGLPQSQGPS ESSEEYDTTS LGNFTPQPPH
301: HRPLWPGNNP Q
101: KRKGRPLGSR DKQPRKASVG GGGGGGGPLT AHVINVNAGE DIAIKLVEFM KQEPREVCIL SASGVVSIAV VQSDNPLGFV KYEGLYVITD LSGTFWNTES
201: NDGGATVTRT GNLRVSLAGP DCKVVCGCVC GMLVAGSQVE VTVGTFVREG VKLSSASAPA NVSSLTGGGG PGLPQSQGPS ESSEEYDTTS LGNFTPQPPH
301: HRPLWPGNNP Q
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.