CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92649
CDY03427
CDY08946
CDY11029
CDY24845
CDY34302

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51780.1	CDX92649	AT4G24690.1	21798944
AT3G51780.1	CDY03427	AT4G24690.1	21798944
AT3G51780.1	CDY08946	AT4G24690.1	21798944
AT3G51780.1	CDY11029	AT4G24690.1	21798944
AT3G51780.1	CDY24845	AT4G24690.1	21798944
AT3G51780.1	CDY34302	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78039	Canola	cytosol	94.7	95.79
AT3G51780.1	Thale cress	cytosol	81.44	79.93
CDX90634	Canola	cytosol	57.58	69.09
CDY29046	Canola	cytosol	54.92	63.32
VIT_08s0058g00130.t01	Wine grape	cytosol	49.62	58.74
VIT_04s0044g02000.t01	Wine grape	cytosol, peroxisome, plastid	25.0	54.55
Zm00001d042985_P001	Maize	cytosol, extracellular	53.41	54.44
EES01703	Sorghum	cytosol	53.41	54.44
HORVU3Hr1G087700.1	Barley	cytosol	51.52	52.51
Os01t0831200-01	Rice	cytosol	51.52	51.91
Zm00001d012460_P001	Maize	cytosol	47.35	51.87
KRH65641	Soybean	nucleus	48.11	50.8
TraesCS3D01G344700.1	Wheat	cytosol	51.52	50.75
TraesCS3A01G350700.1	Wheat	cytosol	51.14	50.37
TraesCS3B01G383300.1	Wheat	cytosol	50.76	50.0
KRH49429	Soybean	cytosol	47.35	49.21
GSMUA_AchrUn_...	Banana	cytosol	43.56	48.32
KRH75994	Soybean	cytosol	45.45	47.43
GSMUA_Achr4P16720_001	Banana	cytosol	33.33	41.12
Solyc10g085290.1.1	Tomato	cytosol	48.11	36.39
CDX70017	Canola	cytosol	34.85	29.97
CDY38897	Canola	cytosol	37.12	29.88
CDY68101	Canola	cytosol	36.74	29.75
CDX98996	Canola	cytosol	34.47	29.74
CDY67495	Canola	cytosol	36.36	29.36
CDY27085	Canola	cytosol	36.36	29.36
PGSC0003DMT400028657	Potato	cytosol	48.48	29.09
CDY30694	Canola	cytosol	32.2	28.62
CDY30692	Canola	cytosol	32.2	28.62
CDX91068	Canola	cytosol, mitochondrion	17.05	27.95
CDX85601	Canola	cytosol, mitochondrion	16.67	27.5
CDX70560	Canola	cytosol, mitochondrion	16.67	26.99
CDX78574	Canola	cytosol, mitochondrion	15.15	24.1
CDY70267	Canola	cytosol, mitochondrion, plastid	14.39	23.46
CDY36367	Canola	plastid	14.39	23.46
CDY09848	Canola	cytosol	10.98	21.8

Protein Annotations

Gene3D:1.20.58.120	MapMan:19.1.5.5	Gene3D:3.10.20.90	GO:A0A078CA04	InterPro:BAG_dom_sf	InterPro:BAG_domain
EnsemblPlants:CDX73692	ProteinID:CDX73692	ProteinID:CDX73692.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0051087	EnsemblPlantsGene:GSBRNA2T00109285001	InterPro:IPR000626	InterPro:IPR003103	InterPro:IPR036533
PFAM:PF00240	PFAM:PF02179	PFscan:PS50053	PFscan:PS51035	PANTHER:PTHR12329	PANTHER:PTHR12329:SF21
SMART:SM00264	SUPFAM:SSF54236	SUPFAM:SSF63491	UniParc:UPI0004EC094A	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaC08g23110D

Coordinates

chrLK031799:+:2169371..2170694

Molecular Weight (calculated)

28610.7 Da

IEP (calculated)

4.805

GRAVY (calculated)

-0.423

Length

264 amino acids

Sequence
(BLAST)

001: MNNNSTDDSE WEVRPGGMLV QRRDDSASSS DPQHPAVFGQ AIRINVSHGS SHHDLHVSAH ATFGDVKKAL VQKTGLEAAD LKILFRGVEK DDAEQLQASG
101: VKDGSKVVLV EEPMKRVEQV EQPPVMTEEM AKSIAAVKAV SGEIDKLSDK VVALEVSVNG GTKVAVEEFD MTVELLMRQL LKLDGIEAEG EARVLRKAEV
201: RRVQKLQEAV DTLKGRCSNP FVDQSKAAAV STEWETFGSG VGSLNPPPPA SPSANVTQDW EKFD

Best Arabidopsis Sequence Match ( AT3G51780.1 )
(BLAST)

001: MMHNSTEESE WEVRPGGMLV QRRDDAASSD HKPLQDPDSA SAAFAQTIRI TVSHGSSHHD LHISAHATFG DVKKALVQKT GLEASELKIL FRGVERDDAE
101: QLQAAGVKDA SKLVVVVEDT NKRVEQQPPV VTKEMEKAIA AVNAVTGEVD KLSDRVVALE VAVNGGTQVA VREFDMAAEL LMRQLLKLDG IEAEGDAKVQ
201: RKAEVRRIQN LQEAVDKLKA RCSNPFVDQS KAAAVSTEWE SFGNGVGSLN PPPPASPSAN VTQDWEKFD

Arabidopsis Description

BAG4BAG family molecular chaperone regulator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.