CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025558.1-P	Field mustard	cytosol, mitochondrion, plastid	99.38	99.38
CDY36367	Canola	plastid	98.77	98.77
AT5G40630.1	Thale cress	cytosol, mitochondrion, plastid	86.42	84.85
CDX85601	Canola	cytosol, mitochondrion	50.62	51.25
CDX91068	Canola	cytosol, mitochondrion	50.62	50.93
CDX70560	Canola	cytosol, mitochondrion	48.77	48.47
GSMUA_Achr6P06780_001	Banana	cytosol, mitochondrion	43.83	46.71
EES11012	Sorghum	mitochondrion	45.06	46.2
TraesCS2B01G360600.1	Wheat	mitochondrion	47.53	45.03
TraesCS6D01G194400.1	Wheat	mitochondrion	44.44	44.72
CDX78574	Canola	cytosol, mitochondrion	45.68	44.58
Zm00001d050988_P001	Maize	mitochondrion	40.12	44.52
HORVU6Hr1G053980.1	Barley	mitochondrion	43.83	44.38
GSMUA_AchrUn_...	Banana	cytosol	41.36	44.37
TraesCS6B01G240800.1	Wheat	mitochondrion	44.44	43.9
HORVU2Hr1G083680.2	Barley	cytosol, mitochondrion, plastid	45.68	43.79
EES11013	Sorghum	mitochondrion	43.21	43.21
TraesCS2A01G321700.1	Wheat	mitochondrion	45.06	43.2
TraesCS2D01G341100.1	Wheat	mitochondrion	45.06	43.2
TraesCS2A01G321900.1	Wheat	cytosol, mitochondrion, plastid	45.06	43.2
Zm00001d003264_P001	Maize	mitochondrion	44.44	43.11
TraesCS6A01G211300.1	Wheat	mitochondrion	41.98	43.04
TraesCS2D01G340900.1	Wheat	mitochondrion	45.06	42.94
TraesCS2B01G360700.1	Wheat	cytosol, mitochondrion	44.44	42.6
TraesCS2A01G322100.1	Wheat	mitochondrion	44.44	42.35
HORVU2Hr1G083660.1	Barley	plastid	44.44	42.35
TraesCS2A01G321800.1	Wheat	mitochondrion	44.44	42.11
Zm00001d017107_P001	Maize	mitochondrion	42.59	41.82
Os02t0597700-00	Rice	mitochondrion	43.21	41.67
EES05371	Sorghum	mitochondrion	41.36	41.61
OQU88071	Sorghum	mitochondrion	41.36	41.61
TraesCS2A01G322000.1	Wheat	cytosol, mitochondrion, plastid	44.44	41.38
Zm00001d012109_P001	Maize	mitochondrion	41.36	40.36
Zm00001d042449_P001	Maize	mitochondrion	40.12	39.63
TraesCS3A01G390300.1	Wheat	mitochondrion	37.65	37.65
TraesCS3A01G390600.1	Wheat	mitochondrion	37.65	37.65
TraesCS3B01G422300.1	Wheat	mitochondrion	37.65	37.65
CDY09848	Canola	cytosol	30.86	37.59
TraesCS3D01G382600.1	Wheat	mitochondrion	37.04	37.04
TraesCS3B01G422400.1	Wheat	mitochondrion	37.04	37.04
TraesCS3D01G383200.1	Wheat	mitochondrion	37.04	36.81
TraesCS3D01G382700.1	Wheat	mitochondrion	37.04	36.81
HORVU3Hr1G081400.3	Barley	mitochondrion	37.04	36.59
TraesCS3A01G390400.1	Wheat	mitochondrion	35.8	35.8
TraesCS3D01G383000.1	Wheat	mitochondrion	35.8	35.15
TraesCS3D01G382800.1	Wheat	mitochondrion	35.8	35.15
TraesCS3A01G390500.1	Wheat	mitochondrion	35.8	35.15
Os01t0907200-00	Rice	mitochondrion	40.74	33.67
HORVU2Hr1G083700.4	Barley	plastid	45.68	32.03
OQU80203	Sorghum	mitochondrion	30.25	32.03
EES14399	Sorghum	cytosol	30.86	31.85
CDX78039	Canola	cytosol	24.07	14.94
CDY27085	Canola	cytosol	29.63	14.68
CDX73692	Canola	cytosol	23.46	14.39
CDY30694	Canola	cytosol	25.93	14.14
CDY30692	Canola	cytosol	25.93	14.14
CDY67495	Canola	cytosol	28.4	14.07
CDY38897	Canola	cytosol	28.4	14.02
CDY68101	Canola	cytosol	27.78	13.8
CDX90634	Canola	cytosol	17.9	13.18
CDX98996	Canola	cytosol	24.69	13.07
CDX70017	Canola	cytosol	24.69	13.03
CDY29046	Canola	cytosol	17.9	12.66

Protein Annotations

EnsemblPlants:CDY70267	EnsemblPlantsGene:GSBRNA2T00097650001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF91	PFAM:PF00240
PFscan:PS50053	ProteinID:CDY70267	ProteinID:CDY70267.1	SEG:seg	SMART:SM00213	SUPFAM:SSF54236
UniParc:UPI0004EF0C4E	UniProt:A0A078JXE9	MapMan:35.2	:	:	:

Description

BnaA04g27870DBnaA04g27870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JXE9]

Coordinates

chrLK041630:+:1287..2769

Molecular Weight (calculated)

18001.7 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.309

Length

162 amino acids

Sequence
(BLAST)

001: MGKLMAKRFC IGFVCGRSGT SNSNNKRSSS SLSSSSSSSL SCNNNNIKWE MRPGGMLVQK RSEDSNTEDL ISLKVSTVSQ LSYEISIDAN STFGELKMMI
101: AIVSGIEPIE QRLLFKGKER EDREYLHMIG VGDGDKVFLL QDPAFKELKL LRFSSPPNYC LI

Best Arabidopsis Sequence Match ( AT5G40630.1 )
(BLAST)

001: MGKLMAKRFC IGFGCGRIGT GNNKRSSSSS SSSSSFSSLS SSSSSSSSSC NNNNIKWEMR PGGMLVQKRS EDSNTEDLIS LRVSTVSQLS YEISIDANST
101: FGELKMMIAI VSGIEAKEQR LLFRGKERED REYLHMIGVG DGDKVFLLQD PAFKELKHIH LPITV

Arabidopsis Description

AT5G40630 protein [Source:UniProtKB/TrEMBL;Acc:Q9FM35]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.