Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36367 | Canola | plastid | 85.45 | 87.04 |
| CDY70267 | Canola | cytosol, mitochondrion, plastid | 84.85 | 86.42 |
| Bra025558.1-P | Field mustard | cytosol, mitochondrion, plastid | 84.24 | 85.8 |
| AT5G14360.1 | Thale cress | cytosol, mitochondrion | 48.48 | 49.08 |
| EES11012 | Sorghum | mitochondrion | 43.64 | 45.57 |
| GSMUA_Achr6P06780_001 | Banana | cytosol, mitochondrion | 41.82 | 45.39 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.21 | 45.03 |
| Zm00001d050988_P001 | Maize | mitochondrion | 38.79 | 43.84 |
| HORVU2Hr1G083680.2 | Barley | cytosol, mitochondrion, plastid | 44.85 | 43.79 |
| TraesCS6D01G194400.1 | Wheat | mitochondrion | 42.42 | 43.48 |
| TraesCS2B01G360600.1 | Wheat | mitochondrion | 44.85 | 43.27 |
| EES11013 | Sorghum | mitochondrion | 42.42 | 43.21 |
| TraesCS2A01G321900.1 | Wheat | cytosol, mitochondrion, plastid | 44.24 | 43.2 |
| Zm00001d003264_P001 | Maize | mitochondrion | 43.64 | 43.11 |
| TraesCS2D01G340900.1 | Wheat | mitochondrion | 44.24 | 42.94 |
| TraesCS6B01G240800.1 | Wheat | mitochondrion | 42.42 | 42.68 |
| TraesCS2D01G341100.1 | Wheat | mitochondrion | 43.64 | 42.6 |
| TraesCS2A01G321700.1 | Wheat | mitochondrion | 43.64 | 42.6 |
| HORVU6Hr1G053980.1 | Barley | mitochondrion | 41.21 | 42.5 |
| OQU88071 | Sorghum | mitochondrion | 41.21 | 42.24 |
| TraesCS2B01G360700.1 | Wheat | cytosol, mitochondrion | 43.03 | 42.01 |
| Zm00001d017107_P001 | Maize | mitochondrion | 41.82 | 41.82 |
| HORVU2Hr1G083660.1 | Barley | plastid | 43.03 | 41.76 |
| TraesCS2A01G322100.1 | Wheat | mitochondrion | 43.03 | 41.76 |
| Os02t0597700-00 | Rice | mitochondrion | 42.42 | 41.67 |
| TraesCS2A01G321800.1 | Wheat | mitochondrion | 43.03 | 41.52 |
| TraesCS2A01G322000.1 | Wheat | cytosol, mitochondrion, plastid | 43.64 | 41.38 |
| EES05371 | Sorghum | mitochondrion | 40.0 | 40.99 |
| TraesCS6A01G211300.1 | Wheat | mitochondrion | 38.79 | 40.51 |
| Zm00001d042449_P001 | Maize | mitochondrion | 40.0 | 40.24 |
| Zm00001d012109_P001 | Maize | mitochondrion | 40.0 | 39.76 |
| TraesCS3A01G390600.1 | Wheat | mitochondrion | 37.58 | 38.27 |
| TraesCS3B01G422400.1 | Wheat | mitochondrion | 36.97 | 37.65 |
| TraesCS3B01G422300.1 | Wheat | mitochondrion | 36.97 | 37.65 |
| TraesCS3D01G383200.1 | Wheat | mitochondrion | 36.97 | 37.42 |
| HORVU3Hr1G081400.3 | Barley | mitochondrion | 36.97 | 37.2 |
| TraesCS3A01G390300.1 | Wheat | mitochondrion | 36.36 | 37.04 |
| TraesCS3D01G382600.1 | Wheat | mitochondrion | 35.76 | 36.42 |
| TraesCS3D01G382700.1 | Wheat | mitochondrion | 35.76 | 36.2 |
| TraesCS3A01G390500.1 | Wheat | mitochondrion | 35.76 | 35.76 |
| TraesCS3D01G382800.1 | Wheat | mitochondrion | 35.76 | 35.76 |
| TraesCS3D01G383000.1 | Wheat | mitochondrion | 35.76 | 35.76 |
| TraesCS3A01G390400.1 | Wheat | mitochondrion | 34.55 | 35.19 |
| Os01t0907200-00 | Rice | mitochondrion | 38.79 | 32.65 |
| OQU80203 | Sorghum | mitochondrion | 29.7 | 32.03 |
| HORVU2Hr1G083700.4 | Barley | plastid | 43.64 | 31.17 |
| EES14399 | Sorghum | cytosol | 28.48 | 29.94 |
| AT3G51780.1 | Thale cress | cytosol | 24.85 | 15.24 |
| AT5G62100.1 | Thale cress | cytosol | 24.85 | 13.85 |
| AT5G07220.1 | Thale cress | cytosol | 23.03 | 12.54 |
| AT5G52060.1 | Thale cress | cytosol | 25.45 | 12.28 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:834062 | UniProt:A0A178UHV0 | ProteinID:AED94575.1 | EMBL:AK117320 |
| EMBL:AK317452 | ArrayExpress:AT5G40630 | EnsemblPlantsGene:AT5G40630 | RefSeq:AT5G40630 | TAIR:AT5G40630 | RefSeq:AT5G40630-TAIR-G |
| EnsemblPlants:AT5G40630.1 | TAIR:AT5G40630.1 | Unigene:At.30276 | ProteinID:BAB08534.1 | EMBL:BT043485 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000626 | RefSeq:NP_198879.1 | ProteinID:OAO93265.1 | PFAM:PF00240 |
| PO:PO:0000230 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 | PFscan:PS50053 | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF91 | UniProt:Q9FM35 | SUPFAM:SSF54236 | UniParc:UPI00000ABFA5 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
| SEG:seg | : | : | : | : | : |
Description
AT5G40630 protein [Source:UniProtKB/TrEMBL;Acc:Q9FM35]
Coordinates
chr5:-:16271047..16272513
Molecular Weight (calculated)
18110.6 Da
IEP (calculated)
8.877
GRAVY (calculated)
-0.356
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLMAKRFC IGFGCGRIGT GNNKRSSSSS SSSSSFSSLS SSSSSSSSSC NNNNIKWEMR PGGMLVQKRS EDSNTEDLIS LRVSTVSQLS YEISIDANST
101: FGELKMMIAI VSGIEAKEQR LLFRGKERED REYLHMIGVG DGDKVFLLQD PAFKELKHIH LPITV
101: FGELKMMIAI VSGIEAKEQR LLFRGKERED REYLHMIGVG DGDKVFLLQD PAFKELKHIH LPITV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.