CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050988_P001	Maize	mitochondrion	81.37	89.73
Zm00001d017107_P001	Maize	mitochondrion	83.85	81.82
Os02t0597700-00	Rice	mitochondrion	81.99	78.57
TraesCS6D01G194400.1	Wheat	mitochondrion	77.64	77.64
TraesCS6B01G240800.1	Wheat	mitochondrion	78.26	76.83
HORVU6Hr1G053980.1	Barley	mitochondrion	74.53	75.0
TraesCS6A01G211300.1	Wheat	mitochondrion	70.81	72.15
EES11012	Sorghum	mitochondrion	70.19	71.52
EES11013	Sorghum	mitochondrion	70.81	70.37
GSMUA_AchrUn_...	Banana	cytosol	60.25	64.24
GSMUA_Achr6P06780_001	Banana	cytosol, mitochondrion	59.63	63.16
VIT_14s0219g00210.t01	Wine grape	cytosol	56.52	61.9
PGSC0003DMT400017936	Potato	mitochondrion	47.2	59.84
OQU88071	Sorghum	mitochondrion	58.39	58.39
KRG93982	Soybean	cytosol, mitochondrion	55.28	55.97
KRG94376	Soybean	cytosol, mitochondrion	52.8	54.49
KRH07081	Soybean	cytosol, mitochondrion	52.8	54.14
Solyc02g093610.2.1	Tomato	mitochondrion	50.31	52.94
PGSC0003DMT400032912	Potato	mitochondrion	50.93	52.56
CDX85601	Canola	cytosol, mitochondrion	50.93	51.25
CDX91068	Canola	cytosol, mitochondrion	50.93	50.93
Bra023460.1-P	Field mustard	cytosol, mitochondrion	50.31	50.62
CDX70560	Canola	cytosol, mitochondrion	50.93	50.31
Bra006251.1-P	Field mustard	cytosol, mitochondrion	50.93	50.31
AT5G14360.1	Thale cress	cytosol, mitochondrion	50.31	49.69
CDX78574	Canola	cytosol, mitochondrion	47.2	45.78
OQU80203	Sorghum	mitochondrion	39.75	41.83
Bra025558.1-P	Field mustard	cytosol, mitochondrion, plastid	41.61	41.36
CDY36367	Canola	plastid	41.61	41.36
CDY70267	Canola	cytosol, mitochondrion, plastid	41.61	41.36
CDY09848	Canola	cytosol	34.16	41.35
AT5G40630.1	Thale cress	cytosol, mitochondrion, plastid	40.99	40.0
EES14399	Sorghum	cytosol	38.51	39.49
EES01703	Sorghum	cytosol	37.89	23.55
EES11441	Sorghum	cytosol	31.06	18.38
KXG36034	Sorghum	cytosol	34.16	16.57
EES14129	Sorghum	cytosol	33.54	16.41
EER87751	Sorghum	cytosol	33.54	15.56

Protein Annotations

EnsemblPlants:EES05371	EnsemblPlantsGene:SORBI_3004G203700	EntrezGene:8056484	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF178
PFAM:PF00240	PFscan:PS50053	ProteinID:EES05371	ProteinID:EES05371.1	RefSeq:XP_002452395.1	SEG:seg
SUPFAM:SSF54236	UniParc:UPI0001A85250	UniProt:C5XX41	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr4:+:55548397..55551314

Molecular Weight (calculated)

17707.4 Da

IEP (calculated)

10.246

GRAVY (calculated)

-0.435

Length

161 amino acids

Sequence
(BLAST)

001: MIKLGYSKRL FKRSTSSSKQ QQQQAAACGG GDNGVGGGAG EIEWEVRPGG MLVQKRNGRG GQEMVTVRVS TGFSWHDVSI AATSTFGELK VMLSMITGLE
101: PREQRLLFRG KERDDTDHLH MVGVRDKDKV LLLEDPALKD MKLRALSAQV TRSSCQPFIQ V

Best Arabidopsis Sequence Match ( AT5G14360.1 )
(BLAST)

001: MMKFKTKRFG IRFGFGKRIN NKGTQQDQQQ KGVGNNNNNS SCSNCEIKWE LRPGGMLVQK RQESIGEDLI SIRVSTFAHF HDLSIEATST FGELKMVLSL
101: LTGLEPKQQR LVFKGKERED HEYLHMVGVG DKDKVLLLED PGFKDKKLLD LNSISTTCPT IIV

Arabidopsis Description

At5g14360 [Source:UniProtKB/TrEMBL;Acc:Q9LY93]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.