Factsheet for PGSC0003DMT400032912

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093610.2.1	Tomato	mitochondrion	88.46	90.2
PGSC0003DMT400017936	Potato	mitochondrion	53.85	66.14
VIT_14s0219g00210.t01	Wine grape	cytosol	59.62	63.27
KRH07081	Soybean	cytosol, mitochondrion	58.97	58.6
KRG93982	Soybean	cytosol, mitochondrion	58.97	57.86
GSMUA_Achr6P06780_001	Banana	cytosol, mitochondrion	54.49	55.92
KRG94376	Soybean	cytosol, mitochondrion	55.13	55.13
Zm00001d050988_P001	Maize	mitochondrion	51.28	54.79
GSMUA_AchrUn_...	Banana	cytosol	51.92	53.64
EES11012	Sorghum	mitochondrion	53.21	52.53
EES11013	Sorghum	mitochondrion	54.49	52.47
TraesCS2A01G321900.1	Wheat	cytosol, mitochondrion, plastid	55.77	51.48
Os02t0597700-00	Rice	mitochondrion	55.13	51.19
HORVU2Hr1G083660.1	Barley	plastid	55.77	51.18
TraesCS2D01G340900.1	Wheat	mitochondrion	55.77	51.18
EES05371	Sorghum	mitochondrion	52.56	50.93
TraesCS2A01G321700.1	Wheat	mitochondrion	55.13	50.89
CDX85601	Canola	cytosol, mitochondrion	51.28	50.0
TraesCS2D01G341100.1	Wheat	mitochondrion	53.85	49.7
TraesCS6D01G194400.1	Wheat	mitochondrion	51.28	49.69
CDX91068	Canola	cytosol, mitochondrion	51.28	49.69
TraesCS2A01G322100.1	Wheat	mitochondrion	53.85	49.41
Bra023460.1-P	Field mustard	cytosol, mitochondrion	50.64	49.38
TraesCS2A01G321800.1	Wheat	mitochondrion	53.85	49.12
TraesCS2B01G360700.1	Wheat	cytosol, mitochondrion	53.21	49.11
Zm00001d017107_P001	Maize	mitochondrion	51.92	49.09
Bra006251.1-P	Field mustard	cytosol, mitochondrion	51.28	49.08
CDX70560	Canola	cytosol, mitochondrion	51.28	49.08
OQU88071	Sorghum	mitochondrion	50.64	49.07
TraesCS6B01G240800.1	Wheat	mitochondrion	51.28	48.78
HORVU6Hr1G053980.1	Barley	mitochondrion	50.0	48.75
TraesCS2B01G360600.1	Wheat	mitochondrion	53.21	48.54
HORVU2Hr1G083680.2	Barley	cytosol, mitochondrion, plastid	52.56	48.52
TraesCS2A01G322000.1	Wheat	cytosol, mitochondrion, plastid	53.85	48.28
AT5G14360.1	Thale cress	cytosol, mitochondrion	50.0	47.85
TraesCS6A01G211300.1	Wheat	mitochondrion	47.44	46.84
Zm00001d003264_P001	Maize	mitochondrion	50.0	46.71
CDX78574	Canola	cytosol, mitochondrion	48.72	45.78
Zm00001d042449_P001	Maize	mitochondrion	48.08	45.73
TraesCS3A01G390600.1	Wheat	mitochondrion	44.87	43.21
Zm00001d012109_P001	Maize	mitochondrion	45.51	42.77
TraesCS3B01G422400.1	Wheat	mitochondrion	44.23	42.59
TraesCS3D01G383200.1	Wheat	mitochondrion	44.23	42.33
TraesCS3B01G422300.1	Wheat	mitochondrion	43.59	41.98
TraesCS3D01G382700.1	Wheat	mitochondrion	43.59	41.72
HORVU3Hr1G081400.3	Barley	mitochondrion	43.59	41.46
TraesCS3A01G390300.1	Wheat	mitochondrion	42.95	41.36
TraesCS3D01G382600.1	Wheat	mitochondrion	42.95	41.36
TraesCS3D01G383000.1	Wheat	mitochondrion	43.59	41.21
TraesCS3A01G390500.1	Wheat	mitochondrion	42.95	40.61
TraesCS3D01G382800.1	Wheat	mitochondrion	42.95	40.61
TraesCS3A01G390400.1	Wheat	mitochondrion	41.67	40.12
Os01t0907200-00	Rice	mitochondrion	46.79	37.24
HORVU2Hr1G083700.4	Barley	plastid	54.49	36.8
PGSC0003DMT400088988	Potato	cytosol	35.26	36.18
EES14399	Sorghum	cytosol	35.9	35.67
CDY09848	Canola	cytosol	30.13	35.34
OQU80203	Sorghum	mitochondrion	33.97	34.64
PGSC0003DMT400052944	Potato	cytosol	33.97	19.06
PGSC0003DMT400058588	Potato	cytosol	30.13	16.61
PGSC0003DMT400065070	Potato	cytosol	35.26	16.57
PGSC0003DMT400037124	Potato	cytosol	33.97	15.54
PGSC0003DMT400028657	Potato	cytosol	37.18	13.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400032912	EnsemblPlantsGene:PGSC0003DMG400012641	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF91	PFAM:PF00240
PFscan:PS50053	PGSC:PGSC0003DMG400012641	SUPFAM:SSF54236	UniParc:UPI00029490B3	UniProt:M1AYA8	MapMan:35.1

Description

Ubiquitin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012641]

Coordinates

chr2:-:47599979..47601189

Molecular Weight (calculated)

17349.2 Da

IEP (calculated)

9.008

GRAVY (calculated)

-0.333

Length

156 amino acids

Sequence
(BLAST)

001: MKLRCKKLFR SNSKVVASSN ATAVTGSDAK LGGEIKWELR PGGMLVQKRE CAENDGDSII TLRVSTVTQC HHISIQPTSS FGELKMILAM VTGLEPKEQR
101: LLYKGKERED CEYLHMVGVK DKDKVLLFED PAIKERKQAT SGHVQVIGST YHTICV

Best Arabidopsis Sequence Match ( AT5G14360.1 )
(BLAST)

001: MMKFKTKRFG IRFGFGKRIN NKGTQQDQQQ KGVGNNNNNS SCSNCEIKWE LRPGGMLVQK RQESIGEDLI SIRVSTFAHF HDLSIEATST FGELKMVLSL
101: LTGLEPKQQR LVFKGKERED HEYLHMVGVG DKDKVLLLED PGFKDKKLLD LNSISTTCPT IIV

Arabidopsis Description

At5g14360 [Source:UniProtKB/TrEMBL;Acc:Q9LY93]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.