Factsheet for GSMUA_Achr6P06780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	77.63	78.15
Zm00001d050988_P001	Maize	mitochondrion	61.84	64.38
VIT_14s0219g00210.t01	Wine grape	cytosol	61.84	63.95
TraesCS6D01G194400.1	Wheat	mitochondrion	66.45	62.73
TraesCS2B01G360700.1	Wheat	cytosol, mitochondrion	69.08	62.13
EES11013	Sorghum	mitochondrion	65.79	61.73
TraesCS6B01G240800.1	Wheat	mitochondrion	66.45	61.59
HORVU2Hr1G083680.2	Barley	cytosol, mitochondrion, plastid	68.42	61.54
TraesCS2A01G321900.1	Wheat	cytosol, mitochondrion, plastid	68.42	61.54
Os02t0597700-00	Rice	mitochondrion	67.76	61.31
HORVU6Hr1G053980.1	Barley	mitochondrion	64.47	61.25
TraesCS2D01G340900.1	Wheat	mitochondrion	68.42	61.18
TraesCS2D01G341100.1	Wheat	mitochondrion	67.76	60.95
EES11012	Sorghum	mitochondrion	63.16	60.76
TraesCS6A01G211300.1	Wheat	mitochondrion	63.16	60.76
TraesCS2A01G321700.1	Wheat	mitochondrion	67.11	60.35
TraesCS2A01G321800.1	Wheat	mitochondrion	67.11	59.65
EES05371	Sorghum	mitochondrion	63.16	59.63
TraesCS2A01G322000.1	Wheat	cytosol, mitochondrion, plastid	67.76	59.2
TraesCS2B01G360600.1	Wheat	mitochondrion	66.45	59.06
TraesCS2A01G322100.1	Wheat	mitochondrion	65.79	58.82
HORVU2Hr1G083660.1	Barley	plastid	65.79	58.82
Zm00001d017107_P001	Maize	mitochondrion	62.5	57.58
Solyc02g093610.2.1	Tomato	mitochondrion	57.24	56.86
PGSC0003DMT400017936	Potato	mitochondrion	47.37	56.69
KRH07081	Soybean	cytosol, mitochondrion	58.55	56.69
KRG93982	Soybean	cytosol, mitochondrion	59.21	56.6
Zm00001d003264_P001	Maize	mitochondrion	61.84	56.29
PGSC0003DMT400032912	Potato	mitochondrion	55.92	54.49
KRG94376	Soybean	cytosol, mitochondrion	55.92	54.49
OQU88071	Sorghum	mitochondrion	54.61	51.55
Bra023460.1-P	Field mustard	cytosol, mitochondrion	53.95	51.25
CDX91068	Canola	cytosol, mitochondrion	53.95	50.93
CDX85601	Canola	cytosol, mitochondrion	53.29	50.62
Zm00001d042449_P001	Maize	mitochondrion	53.95	50.0
CDX70560	Canola	cytosol, mitochondrion	53.29	49.69
Bra006251.1-P	Field mustard	cytosol, mitochondrion	53.29	49.69
HORVU3Hr1G081400.3	Barley	mitochondrion	53.29	49.39
TraesCS3B01G422400.1	Wheat	mitochondrion	51.97	48.77
TraesCS3A01G390600.1	Wheat	mitochondrion	51.97	48.77
TraesCS3D01G383000.1	Wheat	mitochondrion	51.97	47.88
TraesCS3D01G383200.1	Wheat	mitochondrion	51.32	47.85
AT5G14360.1	Thale cress	cytosol, mitochondrion	51.32	47.85
Zm00001d012109_P001	Maize	mitochondrion	51.97	47.59
TraesCS3D01G382800.1	Wheat	mitochondrion	51.32	47.27
TraesCS3A01G390300.1	Wheat	mitochondrion	50.0	46.91
TraesCS3D01G382600.1	Wheat	mitochondrion	50.0	46.91
TraesCS3A01G390400.1	Wheat	mitochondrion	50.0	46.91
TraesCS3B01G422300.1	Wheat	mitochondrion	50.0	46.91
TraesCS3A01G390500.1	Wheat	mitochondrion	50.66	46.67
TraesCS3D01G382700.1	Wheat	mitochondrion	50.0	46.63
HORVU2Hr1G083700.4	Barley	plastid	69.74	45.89
CDX78574	Canola	cytosol, mitochondrion	50.0	45.78
CDY70267	Canola	cytosol, mitochondrion, plastid	46.71	43.83
CDY36367	Canola	plastid	46.71	43.83
Bra025558.1-P	Field mustard	cytosol, mitochondrion, plastid	46.71	43.83
Os01t0907200-00	Rice	mitochondrion	54.61	42.35
AT5G40630.1	Thale cress	cytosol, mitochondrion, plastid	45.39	41.82
OQU80203	Sorghum	mitochondrion	40.79	40.52
EES14399	Sorghum	cytosol	40.13	38.85
CDY09848	Canola	cytosol	33.55	38.35
GSMUA_Achr4P16720_001	Banana	cytosol	39.47	28.04
GSMUA_AchrUn_...	Banana	cytosol	42.11	26.89
GSMUA_Achr4P19700_001	Banana	cytosol	36.18	21.48
GSMUA_Achr3P23280_001	Banana	cytosol	34.21	20.23
GSMUA_Achr7P03430_001	Banana	cytosol	32.89	19.92
GSMUA_Achr3P12380_001	Banana	cytosol	34.87	19.41
GSMUA_Achr1P18860_001	Banana	cytosol	32.24	17.25
GSMUA_Achr1P07950_001	Banana	cytosol	33.55	17.17
GSMUA_Achr3P14600_001	Banana	cytosol	32.24	16.61
GSMUA_Achr7P05880_001	Banana	cytosol	33.55	15.6

Protein Annotations

EnsemblPlants:GSMUA_Achr6P06780_001	EnsemblPlants:GSMUA_Achr6T06780_001	EnsemblPlantsGene:GSMUA_Achr6G06780_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF91
PFAM:PF00240	PFscan:PS50053	SEG:seg	SUPFAM:SSF54236	UniParc:UPI0002965881	UniProt:M0T4S7
MapMan:35.1	:	:	:	:	:

Description

ubiquitin family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G06780_001]

Coordinates

chr6:+:4606452..4607206

Molecular Weight (calculated)

16849.6 Da

IEP (calculated)

9.404

GRAVY (calculated)

-0.373

Length

152 amino acids

Sequence
(BLAST)

001: MIRLRSKKLF KRSSSKASGG NGGCSRNGDI QWELRPGGML VQKRECGEGA DEVITVRIST GSSWHEISIG ATATFGELKI VVGMVTGLEP REQRLLFKGK
101: EREDGDHLHM VGVRDKDKVL VLEDPAIKER KLMMAMAERQ VMSSPCHTII EV

Best Arabidopsis Sequence Match ( AT5G14360.1 )
(BLAST)

001: MMKFKTKRFG IRFGFGKRIN NKGTQQDQQQ KGVGNNNNNS SCSNCEIKWE LRPGGMLVQK RQESIGEDLI SIRVSTFAHF HDLSIEATST FGELKMVLSL
101: LTGLEPKQQR LVFKGKERED HEYLHMVGVG DKDKVLLLED PGFKDKKLLD LNSISTTCPT IIV

Arabidopsis Description

At5g14360 [Source:UniProtKB/TrEMBL;Acc:Q9LY93]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.