CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006251.1-P	Field mustard	cytosol, mitochondrion	99.39	99.39
CDX78574	Canola	cytosol, mitochondrion	95.71	93.98
CDX85601	Canola	cytosol, mitochondrion	90.8	92.5
CDX91068	Canola	cytosol, mitochondrion	90.18	91.3
AT5G14360.1	Thale cress	cytosol, mitochondrion	88.34	88.34
CDY09848	Canola	cytosol	65.03	79.7
VIT_14s0219g00210.t01	Wine grape	cytosol	56.44	62.59
PGSC0003DMT400017936	Potato	mitochondrion	46.01	59.06
KRH07081	Soybean	cytosol, mitochondrion	56.44	58.6
KRG94376	Soybean	cytosol, mitochondrion	55.83	58.33
KRG93982	Soybean	cytosol, mitochondrion	55.21	56.6
GSMUA_Achr6P06780_001	Banana	cytosol, mitochondrion	49.69	53.29
GSMUA_AchrUn_...	Banana	cytosol	47.85	51.66
Solyc02g093610.2.1	Tomato	mitochondrion	48.47	51.63
Zm00001d050988_P001	Maize	mitochondrion	46.01	51.37
PGSC0003DMT400032912	Potato	mitochondrion	49.08	51.28
EES05371	Sorghum	mitochondrion	50.31	50.93
Os02t0597700-00	Rice	mitochondrion	51.53	50.0
TraesCS6D01G194400.1	Wheat	mitochondrion	49.08	49.69
HORVU6Hr1G053980.1	Barley	mitochondrion	48.47	49.38
TraesCS6B01G240800.1	Wheat	mitochondrion	49.08	48.78
CDY36367	Canola	plastid	48.47	48.77
CDY70267	Canola	cytosol, mitochondrion, plastid	48.47	48.77
Zm00001d017107_P001	Maize	mitochondrion	49.08	48.48
TraesCS6A01G211300.1	Wheat	mitochondrion	46.63	48.1
EES11012	Sorghum	mitochondrion	46.01	47.47
EES11013	Sorghum	mitochondrion	46.63	46.91
OQU88071	Sorghum	mitochondrion	46.01	46.58
Zm00001d042449_P001	Maize	mitochondrion	46.63	46.34
TraesCS2D01G341100.1	Wheat	mitochondrion	47.85	46.15
TraesCS2D01G340900.1	Wheat	mitochondrion	47.85	45.88
TraesCS2A01G321900.1	Wheat	cytosol, mitochondrion, plastid	47.24	45.56
TraesCS2A01G321700.1	Wheat	mitochondrion	47.24	45.56
HORVU2Hr1G083660.1	Barley	plastid	47.24	45.29
HORVU2Hr1G083680.2	Barley	cytosol, mitochondrion, plastid	46.63	44.97
TraesCS3A01G390600.1	Wheat	mitochondrion	44.17	44.44
TraesCS2B01G360600.1	Wheat	mitochondrion	46.63	44.44
TraesCS2B01G360700.1	Wheat	cytosol, mitochondrion	46.01	44.38
Zm00001d003264_P001	Maize	mitochondrion	45.4	44.31
TraesCS2A01G322100.1	Wheat	mitochondrion	46.01	44.12
HORVU3Hr1G081400.3	Barley	mitochondrion	44.17	43.9
TraesCS2A01G321800.1	Wheat	mitochondrion	46.01	43.86
TraesCS3B01G422400.1	Wheat	mitochondrion	43.56	43.83
TraesCS3A01G390300.1	Wheat	mitochondrion	42.94	43.21
TraesCS2A01G322000.1	Wheat	cytosol, mitochondrion, plastid	46.01	43.1
Zm00001d012109_P001	Maize	mitochondrion	43.56	42.77
TraesCS3B01G422300.1	Wheat	mitochondrion	42.33	42.59
TraesCS3D01G382600.1	Wheat	mitochondrion	42.33	42.59
TraesCS3D01G383000.1	Wheat	mitochondrion	42.94	42.42
TraesCS3D01G383200.1	Wheat	mitochondrion	42.33	42.33
TraesCS3D01G382700.1	Wheat	mitochondrion	42.33	42.33
TraesCS3D01G382800.1	Wheat	mitochondrion	42.33	41.82
TraesCS3A01G390400.1	Wheat	mitochondrion	41.1	41.36
TraesCS3A01G390500.1	Wheat	mitochondrion	41.72	41.21
Os01t0907200-00	Rice	mitochondrion	45.4	37.76
OQU80203	Sorghum	mitochondrion	33.74	35.95
EES14399	Sorghum	cytosol	33.74	35.03
HORVU2Hr1G083700.4	Barley	plastid	47.85	33.77
CDX78039	Canola	cytosol	27.61	17.24
CDX90634	Canola	cytosol	22.7	16.82
CDX73692	Canola	cytosol	26.99	16.67
CDY30692	Canola	cytosol	29.45	16.16
CDY30694	Canola	cytosol	29.45	16.16
CDX98996	Canola	cytosol	30.06	16.01
CDX70017	Canola	cytosol	30.06	15.96
CDY29046	Canola	cytosol	22.09	15.72
CDY38897	Canola	cytosol	31.29	15.55
CDY68101	Canola	cytosol	30.67	15.34
CDY67495	Canola	cytosol	30.67	15.29
CDY27085	Canola	cytosol	30.06	14.98

Protein Annotations

EnsemblPlants:CDX70560	EnsemblPlantsGene:GSBRNA2T00140399001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF91	PFAM:PF00240
PFscan:PS50053	ProteinID:CDX70560	ProteinID:CDX70560.1	SEG:seg	SMART:SM00213	SUPFAM:SSF54236
UniParc:UPI0004EB5BA3	MapMan:35.1	:	:	:	:

Description

BnaC03g06440D

Coordinates

chrLK031791:+:1018954..1019929

Molecular Weight (calculated)

18513.5 Da

IEP (calculated)

9.616

GRAVY (calculated)

-0.517

Length

163 amino acids

Sequence
(BLAST)

001: MMKFKSKRFG IRFGFGKRTN NKGTQQDQQQ KGLGNSNNNI SCCNNEIKWE LRPGGMLVQK RQESIGDDLI SIRVSTFATF HDLSIEATST FGELKMVLSL
101: LTGLEPKQQR LLFKGKERED DEYLHMVGVG EKDKVLLLED PAFKEKKLLD RNNISASCLT IIV

Best Arabidopsis Sequence Match ( AT5G14360.1 )
(BLAST)

001: MMKFKTKRFG IRFGFGKRIN NKGTQQDQQQ KGVGNNNNNS SCSNCEIKWE LRPGGMLVQK RQESIGEDLI SIRVSTFAHF HDLSIEATST FGELKMVLSL
101: LTGLEPKQQR LVFKGKERED HEYLHMVGVG DKDKVLLLED PGFKDKKLLD LNSISTTCPT IIV

Arabidopsis Description

At5g14360 [Source:UniProtKB/TrEMBL;Acc:Q9LY93]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.