Factsheet for PGSC0003DMT400017936

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0219g00210.t01	Wine grape	cytosol	67.72	58.5
KRG93982	Soybean	cytosol, mitochondrion	70.08	55.97
KRH07081	Soybean	cytosol, mitochondrion	67.72	54.78
PGSC0003DMT400032912	Potato	mitochondrion	66.14	53.85
Zm00001d050988_P001	Maize	mitochondrion	59.06	51.37
KRG94376	Soybean	cytosol, mitochondrion	62.99	51.28
CDX91068	Canola	cytosol, mitochondrion	60.63	47.83
Bra023460.1-P	Field mustard	cytosol, mitochondrion	59.84	47.5
CDX85601	Canola	cytosol, mitochondrion	59.84	47.5
GSMUA_Achr6P06780_001	Banana	cytosol, mitochondrion	56.69	47.37
EES05371	Sorghum	mitochondrion	59.84	47.2
Bra006251.1-P	Field mustard	cytosol, mitochondrion	59.84	46.63
AT5G14360.1	Thale cress	cytosol, mitochondrion	59.84	46.63
TraesCS6D01G194400.1	Wheat	mitochondrion	59.06	46.58
Os02t0597700-00	Rice	mitochondrion	61.42	46.43
TraesCS6A01G211300.1	Wheat	mitochondrion	57.48	46.2
Zm00001d017107_P001	Maize	mitochondrion	59.84	46.06
CDX70560	Canola	cytosol, mitochondrion	59.06	46.01
TraesCS6B01G240800.1	Wheat	mitochondrion	59.06	45.73
EES11013	Sorghum	mitochondrion	58.27	45.68
HORVU6Hr1G053980.1	Barley	mitochondrion	57.48	45.62
EES11012	Sorghum	mitochondrion	56.69	45.57
GSMUA_AchrUn_...	Banana	cytosol	52.76	44.37
TraesCS2D01G341100.1	Wheat	mitochondrion	58.27	43.79
HORVU2Hr1G083680.2	Barley	cytosol, mitochondrion, plastid	57.48	43.2
TraesCS2A01G321900.1	Wheat	cytosol, mitochondrion, plastid	57.48	43.2
CDX78574	Canola	cytosol, mitochondrion	55.91	42.77
TraesCS2A01G321700.1	Wheat	mitochondrion	56.69	42.6
TraesCS2D01G340900.1	Wheat	mitochondrion	56.69	42.35
HORVU2Hr1G083660.1	Barley	plastid	56.69	42.35
TraesCS2B01G360700.1	Wheat	cytosol, mitochondrion	55.91	42.01
TraesCS2A01G322100.1	Wheat	mitochondrion	55.91	41.76
TraesCS2A01G322000.1	Wheat	cytosol, mitochondrion, plastid	56.69	41.38
Zm00001d003264_P001	Maize	mitochondrion	54.33	41.32
OQU88071	Sorghum	mitochondrion	51.97	40.99
TraesCS2A01G321800.1	Wheat	mitochondrion	55.12	40.94
TraesCS2B01G360600.1	Wheat	mitochondrion	54.33	40.35
Zm00001d042449_P001	Maize	mitochondrion	51.18	39.63
TraesCS3A01G390600.1	Wheat	mitochondrion	48.03	37.65
TraesCS3B01G422400.1	Wheat	mitochondrion	47.24	37.04
CDY09848	Canola	cytosol	38.58	36.84
TraesCS3D01G383200.1	Wheat	mitochondrion	47.24	36.81
Zm00001d012109_P001	Maize	mitochondrion	48.03	36.75
TraesCS3B01G422300.1	Wheat	mitochondrion	46.46	36.42
TraesCS3D01G383000.1	Wheat	mitochondrion	47.24	36.36
HORVU3Hr1G081400.3	Barley	mitochondrion	46.46	35.98
OQU80203	Sorghum	mitochondrion	43.31	35.95
TraesCS3A01G390300.1	Wheat	mitochondrion	45.67	35.8
TraesCS3D01G382600.1	Wheat	mitochondrion	45.67	35.8
TraesCS3D01G382700.1	Wheat	mitochondrion	45.67	35.58
TraesCS3A01G390500.1	Wheat	mitochondrion	45.67	35.15
TraesCS3D01G382800.1	Wheat	mitochondrion	45.67	35.15
TraesCS3A01G390400.1	Wheat	mitochondrion	44.09	34.57
EES14399	Sorghum	cytosol	40.94	33.12
PGSC0003DMT400088988	Potato	cytosol	39.37	32.89
Os01t0907200-00	Rice	mitochondrion	49.61	32.14
HORVU2Hr1G083700.4	Barley	plastid	56.69	31.17
PGSC0003DMT400052944	Potato	cytosol	39.37	17.99
PGSC0003DMT400065070	Potato	cytosol	38.58	14.76
PGSC0003DMT400058588	Potato	cytosol	32.28	14.49
PGSC0003DMT400037124	Potato	cytosol	36.22	13.49
PGSC0003DMT400028657	Potato	cytosol	39.37	11.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400017936	EnsemblPlantsGene:PGSC0003DMG400006966	EntrezGene:102595794	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF91
PFAM:PF00240	PFscan:PS50053	PGSC:PGSC0003DMG400006966	RefSeq:XP_006357170.1	SEG:seg	SUPFAM:SSF54236
UniParc:UPI000296E148	UniProt:M1A9S0	MapMan:35.2	:	:	:

Description

Ubiquitin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006966]

Coordinates

chr2:-:26619695..26620634

Molecular Weight (calculated)

14639.8 Da

IEP (calculated)

10.425

GRAVY (calculated)

-0.613

Length

127 amino acids

Sequence
(BLAST)

001: MINLRSKRFS RKVKSNSNIN NNGGEIKWEL RPGGMLVQKR ECENNISNSN GEAIIKLRVS TVSNFHDISI QPTSTFGELK MMLSIVTGLE PKEQRLLFRG
101: KEREDYEHLH MVGVRDKDKL LLFLSNH

Best Arabidopsis Sequence Match ( AT5G14360.1 )
(BLAST)

001: MMKFKTKRFG IRFGFGKRIN NKGTQQDQQQ KGVGNNNNNS SCSNCEIKWE LRPGGMLVQK RQESIGEDLI SIRVSTFAHF HDLSIEATST FGELKMVLSL
101: LTGLEPKQQR LVFKGKERED HEYLHMVGVG DKDKVLLLED PGFKDKKLLD LNSISTTCPT IIV

Arabidopsis Description

At5g14360 [Source:UniProtKB/TrEMBL;Acc:Q9LY93]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.