CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85601	Canola	cytosol, mitochondrion	98.14	98.75
Bra023460.1-P	Field mustard	cytosol, mitochondrion	97.52	98.12
CDX70560	Canola	cytosol, mitochondrion	91.3	90.18
AT5G14360.1	Thale cress	cytosol, mitochondrion	90.68	89.57
CDX78574	Canola	cytosol, mitochondrion	87.58	84.94
CDY09848	Canola	cytosol	68.32	82.71
VIT_14s0219g00210.t01	Wine grape	cytosol	59.01	64.63
PGSC0003DMT400017936	Potato	mitochondrion	47.83	60.63
KRH07081	Soybean	cytosol, mitochondrion	58.39	59.87
KRG94376	Soybean	cytosol, mitochondrion	57.76	59.62
KRG93982	Soybean	cytosol, mitochondrion	56.52	57.23
GSMUA_Achr6P06780_001	Banana	cytosol, mitochondrion	50.93	53.95
Solyc02g093610.2.1	Tomato	mitochondrion	50.31	52.94
GSMUA_AchrUn_...	Banana	cytosol	49.07	52.32
Zm00001d050988_P001	Maize	mitochondrion	46.58	51.37
PGSC0003DMT400032912	Potato	mitochondrion	49.69	51.28
EES05371	Sorghum	mitochondrion	50.93	50.93
CDY36367	Canola	plastid	50.93	50.62
CDY70267	Canola	cytosol, mitochondrion, plastid	50.93	50.62
TraesCS6D01G194400.1	Wheat	mitochondrion	50.31	50.31
Os02t0597700-00	Rice	mitochondrion	52.17	50.0
HORVU6Hr1G053980.1	Barley	mitochondrion	49.69	50.0
TraesCS6B01G240800.1	Wheat	mitochondrion	50.31	49.39
TraesCS6A01G211300.1	Wheat	mitochondrion	47.83	48.73
Zm00001d017107_P001	Maize	mitochondrion	49.69	48.48
EES11012	Sorghum	mitochondrion	46.58	47.47
EES11013	Sorghum	mitochondrion	47.2	46.91
TraesCS2D01G341100.1	Wheat	mitochondrion	48.45	46.15
OQU88071	Sorghum	mitochondrion	45.96	45.96
TraesCS2D01G340900.1	Wheat	mitochondrion	48.45	45.88
Zm00001d042449_P001	Maize	mitochondrion	46.58	45.73
TraesCS2A01G321900.1	Wheat	cytosol, mitochondrion, plastid	47.83	45.56
TraesCS2A01G321700.1	Wheat	mitochondrion	47.83	45.56
HORVU2Hr1G083660.1	Barley	plastid	47.83	45.29
HORVU2Hr1G083680.2	Barley	cytosol, mitochondrion, plastid	47.2	44.97
Zm00001d003264_P001	Maize	mitochondrion	46.58	44.91
TraesCS3A01G390600.1	Wheat	mitochondrion	44.72	44.44
TraesCS2B01G360600.1	Wheat	mitochondrion	47.2	44.44
TraesCS2B01G360700.1	Wheat	cytosol, mitochondrion	46.58	44.38
TraesCS2A01G322100.1	Wheat	mitochondrion	46.58	44.12
HORVU3Hr1G081400.3	Barley	mitochondrion	44.72	43.9
TraesCS2A01G321800.1	Wheat	mitochondrion	46.58	43.86
TraesCS3B01G422400.1	Wheat	mitochondrion	44.1	43.83
TraesCS3A01G390300.1	Wheat	mitochondrion	43.48	43.21
TraesCS2A01G322000.1	Wheat	cytosol, mitochondrion, plastid	46.58	43.1
TraesCS3B01G422300.1	Wheat	mitochondrion	42.86	42.59
TraesCS3D01G382600.1	Wheat	mitochondrion	42.86	42.59
TraesCS3D01G383000.1	Wheat	mitochondrion	43.48	42.42
TraesCS3D01G382700.1	Wheat	mitochondrion	42.86	42.33
TraesCS3D01G383200.1	Wheat	mitochondrion	42.86	42.33
Zm00001d012109_P001	Maize	mitochondrion	43.48	42.17
TraesCS3D01G382800.1	Wheat	mitochondrion	42.86	41.82
TraesCS3A01G390400.1	Wheat	mitochondrion	41.61	41.36
TraesCS3A01G390500.1	Wheat	mitochondrion	42.24	41.21
OQU80203	Sorghum	mitochondrion	35.4	37.25
Os01t0907200-00	Rice	mitochondrion	45.34	37.24
EES14399	Sorghum	cytosol	34.78	35.67
HORVU2Hr1G083700.4	Barley	plastid	48.45	33.77
CDX78039	Canola	cytosol	28.57	17.62
CDX90634	Canola	cytosol	23.6	17.27
CDX73692	Canola	cytosol	27.95	17.05
CDY29046	Canola	cytosol	22.98	16.16
CDY30692	Canola	cytosol	29.19	15.82
CDY30694	Canola	cytosol	29.19	15.82
CDX98996	Canola	cytosol	29.81	15.69
CDX70017	Canola	cytosol	29.81	15.64
CDY38897	Canola	cytosol	31.06	15.24
CDY68101	Canola	cytosol	30.43	15.03
CDY67495	Canola	cytosol	30.43	14.98
CDY27085	Canola	cytosol	29.81	14.68

Protein Annotations

EnsemblPlants:CDX91068	EnsemblPlantsGene:GSBRNA2T00151840001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF91	PFAM:PF00240
PFscan:PS50053	ProteinID:CDX91068	ProteinID:CDX91068.1	SEG:seg	SMART:SM00213	SUPFAM:SSF54236
UniParc:UPI0004EE68BE	MapMan:35.2	:	:	:	:

Description

BnaC02g05290D

Coordinates

chrLK031865:-:621298..622067

Molecular Weight (calculated)

18345.1 Da

IEP (calculated)

9.972

GRAVY (calculated)

-0.604

Length

161 amino acids

Sequence
(BLAST)

001: MMKFKSKRFG IRFGFGKRTN NKGTQQDQQQ KGFGNNNTNS SSSNYEIKWE LRPGGMLVQK RQESIGEDLI SIRVSTFSHF HDLSIEATST FGELKMVLAL
101: LTGLEPKQQR LLFKGKERED DEYLHMVGVG EKDKVLLLED PAFKEKKLLN NISTSCPTII V

Best Arabidopsis Sequence Match ( AT5G14360.1 )
(BLAST)

001: MMKFKTKRFG IRFGFGKRIN NKGTQQDQQQ KGVGNNNNNS SCSNCEIKWE LRPGGMLVQK RQESIGEDLI SIRVSTFAHF HDLSIEATST FGELKMVLSL
101: LTGLEPKQQR LVFKGKERED HEYLHMVGVG DKDKVLLLED PGFKDKKLLD LNSISTTCPT IIV

Arabidopsis Description

At5g14360 [Source:UniProtKB/TrEMBL;Acc:Q9LY93]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.