CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92649
CDY03427
CDY08946
CDY11029
CDY24845
CDY34302

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51780.1	CDX92649	AT4G24690.1	21798944
AT3G51780.1	CDY03427	AT4G24690.1	21798944
AT3G51780.1	CDY08946	AT4G24690.1	21798944
AT3G51780.1	CDY11029	AT4G24690.1	21798944
AT3G51780.1	CDY24845	AT4G24690.1	21798944
AT3G51780.1	CDY34302	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012837.1-P	Field mustard	cytosol	100.0	100.0
CDY29046	Canola	cytosol	88.64	85.15
CDX73692	Canola	cytosol	69.09	57.58
CDX78039	Canola	cytosol	68.18	57.47
AT3G51780.1	Thale cress	cytosol	67.27	55.02
VIT_04s0044g02000.t01	Wine grape	cytosol, peroxisome, plastid	27.27	49.59
VIT_08s0058g00130.t01	Wine grape	cytosol	45.45	44.84
Zm00001d012460_P001	Maize	cytosol	43.18	39.42
Zm00001d042985_P001	Maize	cytosol, extracellular	45.91	39.0
EES01703	Sorghum	cytosol	45.45	38.61
GSMUA_AchrUn_...	Banana	cytosol	41.36	38.24
KRH49429	Soybean	cytosol	42.27	36.61
KRH65641	Soybean	nucleus	40.91	36.0
HORVU3Hr1G087700.1	Barley	cytosol	41.82	35.52
KRH75994	Soybean	cytosol	40.45	35.18
Os01t0831200-01	Rice	cytosol	41.82	35.11
TraesCS3B01G383300.1	Wheat	cytosol	42.27	34.7
TraesCS3A01G350700.1	Wheat	cytosol	42.27	34.7
TraesCS3D01G344700.1	Wheat	cytosol	41.82	34.33
GSMUA_Achr4P16720_001	Banana	cytosol	31.82	32.71
Solyc10g085290.1.1	Tomato	cytosol	41.36	26.07
CDX91068	Canola	cytosol, mitochondrion	17.27	23.6
CDX85601	Canola	cytosol, mitochondrion	16.82	23.12
CDX70017	Canola	cytosol	31.82	22.8
CDX70560	Canola	cytosol, mitochondrion	16.82	22.7
CDY38897	Canola	cytosol	33.64	22.56
CDX98996	Canola	cytosol	31.36	22.55
CDY68101	Canola	cytosol	33.18	22.39
CDY67495	Canola	cytosol	33.18	22.32
CDY27085	Canola	cytosol	33.18	22.32
CDY30694	Canola	cytosol	29.09	21.55
CDY30692	Canola	cytosol	29.09	21.55
CDX78574	Canola	cytosol, mitochondrion	15.45	20.48
PGSC0003DMT400028657	Potato	cytosol	40.91	20.45
CDY09848	Canola	cytosol	11.82	19.55
CDY70267	Canola	cytosol, mitochondrion, plastid	13.18	17.9
CDY36367	Canola	plastid	13.18	17.9

Protein Annotations

Gene3D:1.20.58.120	MapMan:19.1.5.5	Gene3D:3.10.20.90	GO:A0A078DQC0	InterPro:BAG_dom_sf	InterPro:BAG_domain
EnsemblPlants:CDX90634	ProteinID:CDX90634	ProteinID:CDX90634.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0051087	EnsemblPlantsGene:GSBRNA2T00151278001	InterPro:IPR000626	InterPro:IPR003103	InterPro:IPR036533
PFAM:PF00240	PFAM:PF02179	PFscan:PS50053	PFscan:PS51035	PANTHER:PTHR12329	PANTHER:PTHR12329:SF21
SMART:SM00264	SUPFAM:SSF54236	SUPFAM:SSF63491	UniParc:UPI000254074F	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaA03g41470D

Coordinates

chrLK031863:+:1238807..1240499

Molecular Weight (calculated)

23725.0 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.325

Length

220 amino acids

Sequence
(BLAST)

001: MMHHSTDDSE PDGAMPVQQR DDSASSSDSA SAVSNHTITI TVYHGSSDHH LHVPQHATFG DVKKALVLET GLEATDLKIL FRGDEKDDAE QLQAAGVTEG
101: SVVVLVDEPN KGVDHVEPPP VMTEEIAKAI AAVLAVSGEV DELSDRVGAL EAAVDGGTIV AVKEFDMTAE LLMRQLLKLD GIKADGEARL QRKAEVRRVQ
201: KLQEDVDTLK ARCYRAKPQL

Best Arabidopsis Sequence Match ( AT3G51780.1 )
(BLAST)

001: MMHNSTEESE WEVRPGGMLV QRRDDAASSD HKPLQDPDSA SAAFAQTIRI TVSHGSSHHD LHISAHATFG DVKKALVQKT GLEASELKIL FRGVERDDAE
101: QLQAAGVKDA SKLVVVVEDT NKRVEQQPPV VTKEMEKAIA AVNAVTGEVD KLSDRVVALE VAVNGGTQVA VREFDMAAEL LMRQLLKLDG IEAEGDAKVQ
201: RKAEVRRIQN LQEAVDKLKA RCSNPFVDQS KAAAVSTEWE SFGNGVGSLN PPPPASPSAN VTQDWEKFD

Arabidopsis Description

BAG4BAG family molecular chaperone regulator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.