Factsheet for VIT_04s0044g02000.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g09280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51780.1	VIT_17s0000g09280.t01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00130.t01	Wine grape	cytosol	90.08	48.88
GSMUA_AchrUn_...	Banana	cytosol	60.33	30.67
VIT_06s0004g06960.t01	Wine grape	cytosol	57.85	29.41
KRH65641	Soybean	nucleus	59.5	28.8
KRH75994	Soybean	cytosol	58.68	28.06
Zm00001d012460_P001	Maize	cytosol	55.37	27.8
Bra012837.1-P	Field mustard	cytosol	49.59	27.27
CDX90634	Canola	cytosol	49.59	27.27
CDY29046	Canola	cytosol	51.24	27.07
Zm00001d042985_P001	Maize	cytosol, extracellular	57.02	26.64
EES01703	Sorghum	cytosol	57.02	26.64
KRH49429	Soybean	cytosol	55.37	26.38
GSMUA_Achr4P16720_001	Banana	cytosol	46.28	26.17
CDX78039	Canola	cytosol	55.37	25.67
HORVU3Hr1G087700.1	Barley	cytosol	53.72	25.1
Bra006876.1-P	Field mustard	cytosol	54.55	25.0
CDX73692	Canola	cytosol	54.55	25.0
TraesCS3B01G383300.1	Wheat	cytosol	53.72	24.25
TraesCS3A01G350700.1	Wheat	cytosol	53.72	24.25
AT3G51780.1	Thale cress	cytosol	53.72	24.16
Os01t0831200-01	Rice	cytosol	52.07	24.05
TraesCS3D01G344700.1	Wheat	cytosol	52.89	23.88
VIT_10s0003g04270.t01	Wine grape	cytosol	45.45	21.48
Solyc10g085290.1.1	Tomato	cytosol	51.24	17.77
VIT_14s0219g00210.t01	Wine grape	cytosol	20.66	17.01
VIT_16s0100g00470.t01	Wine grape	cytosol	43.8	15.45
PGSC0003DMT400028657	Potato	cytosol	51.24	14.09

Protein Annotations

Gene3D:1.20.58.120	MapMan:35.1	InterPro:BAG_dom_sf	InterPro:BAG_domain	ProteinID:CCB60371	ProteinID:CCB60371.1
ncoils:Coil	UniProt:F6I0A5	EMBL:FN596506	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	GO:GO:0051087	InterPro:IPR003103	InterPro:IPR036533
PFAM:PF02179	PANTHER:PTHR12329	PANTHER:PTHR12329:SF21	SUPFAM:SSF63491	UniParc:UPI000210A575	ArrayExpress:VIT_04s0044g02000
EnsemblPlantsGene:VIT_04s0044g02000	EnsemblPlants:VIT_04s0044g02000.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:23783987..23784476

Molecular Weight (calculated)

13574.4 Da

IEP (calculated)

4.405

GRAVY (calculated)

-0.468

Length

121 amino acids

Sequence
(BLAST)

001: MEGDLKKRLV QETGGNEIDD QECLQQVEVK DGSKLLLLEE MTSKERKLEE ERRSDEISKA CKSITEVKAK VDKLLEKVVA LEATVNGGTT VEDKEFVVLI
101: ELLMRQLLKL DGIEAEGEAK V

Best Arabidopsis Sequence Match ( AT3G51780.1 )
(BLAST)

001: MMHNSTEESE WEVRPGGMLV QRRDDAASSD HKPLQDPDSA SAAFAQTIRI TVSHGSSHHD LHISAHATFG DVKKALVQKT GLEASELKIL FRGVERDDAE
101: QLQAAGVKDA SKLVVVVEDT NKRVEQQPPV VTKEMEKAIA AVNAVTGEVD KLSDRVVALE VAVNGGTQVA VREFDMAAEL LMRQLLKLDG IEAEGDAKVQ
201: RKAEVRRIQN LQEAVDKLKA RCSNPFVDQS KAAAVSTEWE SFGNGVGSLN PPPPASPSAN VTQDWEKFD

Arabidopsis Description

BAG4BAG family molecular chaperone regulator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.