Factsheet for VIT_08s0058g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g09280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51780.1	VIT_17s0000g09280.t01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g02000.t01	Wine grape	cytosol, peroxisome, plastid	48.88	90.08
VIT_06s0004g06960.t01	Wine grape	cytosol	66.82	62.6
Zm00001d012460_P001	Maize	cytosol	63.68	58.92
KRH65641	Soybean	nucleus	65.02	58.0
KRH75994	Soybean	cytosol	65.02	57.31
Zm00001d042985_P001	Maize	cytosol, extracellular	65.47	56.37
EES01703	Sorghum	cytosol	65.47	56.37
GSMUA_AchrUn_...	Banana	cytosol	59.64	55.88
KRH49429	Soybean	cytosol	60.09	52.76
HORVU3Hr1G087700.1	Barley	cytosol	60.09	51.74
Os01t0831200-01	Rice	cytosol	59.19	50.38
TraesCS3A01G350700.1	Wheat	cytosol	60.09	50.0
CDX78039	Canola	cytosol	58.3	49.81
CDX73692	Canola	cytosol	58.74	49.62
TraesCS3D01G344700.1	Wheat	cytosol	59.19	49.25
TraesCS3B01G383300.1	Wheat	cytosol	59.19	49.25
Bra006876.1-P	Field mustard	cytosol	58.3	49.24
AT3G51780.1	Thale cress	cytosol	56.95	47.21
CDX90634	Canola	cytosol	44.84	45.45
Bra012837.1-P	Field mustard	cytosol	44.84	45.45
CDY29046	Canola	cytosol	44.84	43.67
GSMUA_Achr4P16720_001	Banana	cytosol	40.81	42.52
Solyc10g085290.1.1	Tomato	cytosol	60.99	38.97
VIT_10s0003g04270.t01	Wine grape	cytosol	43.5	37.89
PGSC0003DMT400028657	Potato	cytosol	60.99	30.91
VIT_16s0100g00470.t01	Wine grape	cytosol	46.64	30.32
VIT_14s0219g00210.t01	Wine grape	cytosol	19.28	29.25

Protein Annotations

Gene3D:1.20.58.120	EntrezGene:100243686	wikigene:100243686	MapMan:19.1.5.5	Gene3D:3.10.20.90	InterPro:BAG_dom_sf
InterPro:BAG_domain	ProteinID:CBI18140	ProteinID:CBI18140.3	ncoils:Coil	UniProt:D7SQW2	EMBL:FN594967
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0051087	InterPro:IPR000626	InterPro:IPR003103
InterPro:IPR036533	EntrezGene:LOC100243686	wikigene:LOC100243686	PFAM:PF00240	PFAM:PF02179	PFscan:PS50053
PFscan:PS51035	PANTHER:PTHR12329	PANTHER:PTHR12329:SF21	SMART:SM00213	SMART:SM00264	SUPFAM:SSF54236
SUPFAM:SSF63491	TIGR:TC55618	TIGR:TC68491	UniParc:UPI0001BE14D3	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
ArrayExpress:VIT_08s0058g00130	EnsemblPlantsGene:VIT_08s0058g00130	EnsemblPlants:VIT_08s0058g00130.t01	unigene:Vvi.4798	RefSeq:XP_002271076	RefSeq:XP_002271076.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:8767838..8774256

Molecular Weight (calculated)

24997.0 Da

IEP (calculated)

6.162

GRAVY (calculated)

-0.476

Length

223 amino acids

Sequence
(BLAST)

001: MINIKVCHGS NHHQLHVPIQ STFGDLKKRL VQETGLEPKD QRLLFRGKEI DDQECLQQVG VKDRSKLLLL EEMASKERKL EEARRSDEIS KACKAVAEVK
101: AEVDKLLEKV VALEATVNGG TTVENKEFVV LTELLMRQLL KLDGIEAEGE AKVQRRAEVR RVQSLVEMLD TLKARNSNPF STKSNAVSVT TKWETFESGL
201: GSLTAPPPMP SSTAVNQDWE TFD

Best Arabidopsis Sequence Match ( AT3G51780.1 )
(BLAST)

001: MMHNSTEESE WEVRPGGMLV QRRDDAASSD HKPLQDPDSA SAAFAQTIRI TVSHGSSHHD LHISAHATFG DVKKALVQKT GLEASELKIL FRGVERDDAE
101: QLQAAGVKDA SKLVVVVEDT NKRVEQQPPV VTKEMEKAIA AVNAVTGEVD KLSDRVVALE VAVNGGTQVA VREFDMAAEL LMRQLLKLDG IEAEGDAKVQ
201: RKAEVRRIQN LQEAVDKLKA RCSNPFVDQS KAAAVSTEWE SFGNGVGSLN PPPPASPSAN VTQDWEKFD

Arabidopsis Description

BAG4BAG family molecular chaperone regulator 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.