CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68589
CDX85073
CDX88086
CDX88087
CDY43528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	CDX68589	AT4G29820.1	21798944
AT4G24690.1	CDX85073	AT4G29820.1	21798944
AT4G24690.1	CDX88086	AT4G29820.1	21798944
AT4G24690.1	CDX88087	AT4G29820.1	21798944
AT4G24690.1	CDY43528	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24845	Canola	plastid	81.97	78.81
CDY03427	Canola	cytosol	74.27	68.37
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	73.19	67.47
CDY34302	Canola	plastid	72.42	66.95
CDY11029	Canola	plastid	64.56	61.89
CDX92649	Canola	cytosol	65.49	61.51
PGSC0003DMT400019556	Potato	extracellular	9.09	60.2
Solyc06g071770.2.1	Tomato	nucleus	40.52	35.69
PGSC0003DMT400069639	Potato	nucleus	40.37	35.65
PGSC0003DMT400046670	Potato	nucleus	46.23	34.8
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	45.92	34.49
KRH57136	Soybean	nucleus	45.15	33.37
VIT_17s0000g09280.t01	Wine grape	nucleus	44.38	33.1
KRH03220	Soybean	nucleus	39.91	31.9
Os02t0593700-01	Rice	nucleus	40.99	31.48
GSMUA_Achr9P01840_001	Banana	nucleus	40.22	31.18
GSMUA_AchrUn_...	Banana	extracellular	7.09	31.08
HORVU6Hr1G053250.1	Barley	cytosol	39.6	29.92
TraesCS6B01G236800.1	Wheat	cytosol	39.6	29.64
EES07083	Sorghum	nucleus	38.67	29.56
TraesCS6A01G208300.2	Wheat	nucleus	39.6	29.54
Zm00001d040272_P001	Maize	plastid	5.39	29.17
Zm00001d017072_P002	Maize	nucleus	37.6	28.98
TraesCS6D01G191900.3	Wheat	nucleus	36.98	27.43
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	36.06	27.4
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	36.06	27.37
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	35.59	26.99
Zm00001d003300_P001	Maize	nucleus	30.2	26.24
HORVU2Hr1G082590.15	Barley	nucleus	35.59	25.47
Os04t0476800-01	Rice	nucleus	34.36	25.31
KXG26554	Sorghum	nucleus	34.51	25.03

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:A0A078F6B9
UniProt:A0A078F6B9	EnsemblPlants:CDY08946	ProteinID:CDY08946	ProteinID:CDY08946.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016236	GO:GO:0043130	EnsemblPlantsGene:GSBRNA2T00000981001	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569
PFAM:PF16158	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291
SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA-like_sf	UniParc:UPI0004EE57FD
InterPro:Znf_ZZ	:	:	:	:	:

Description

BnaC08g11760DBnaC08g11760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6B9]

Coordinates

chrLK031990:+:661511..664634

Molecular Weight (calculated)

70611.6 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.308

Length

649 amino acids

Sequence
(BLAST)

001: MDSTTALVVK VSYGGVLRRF RVSVNANGQL DLDMAALRGK IASLFNLSVD ADFSLTYSDE DGDVVALVDD NDLFDVTNQR LKFLKIHVQS NTNSVAPTAS
101: AMPNRVNPVS QIQKGIDDVL TAVPNPVPET ISKVYIDLAS KEASSSPVVG ELFDCISKLG TLSGPQEGSL LSPVAIPVLS GPYPSREVPS FGEMKKSQPG
201: RKPADLNEPT GFAVSKTSGP VPTSSGLGPS FNECPFSGST ANRSGPNPSN FKKHTRRVCH NKKSSNGDYW TSLGVFHKGI RCDGCGVLPI TGPRFKSKVK
301: EDYDLCTICF SVMGNEEDYT RMDKPASFQH SHPFGGQLTP ISNPWVGHVP QPQHGGLLLR CTRPKLDSRF VLDVNVLDGT RFAPSAQFTK IWKMRNNGSL
401: VWPHGTRIVW IGGDRLNNSL SVDLQIPVEG APLDSELDVK VDCVAPELPG RYISYWRMAS SSGAKFGQRV WVLIHVDASL ENCVVNKFHG LNLNASPDEN
501: FSSELTGINV NHEPAQAGSS SVNSEVVKGA DLEGEAAVSK VAEKDDLPDI PVDLQEGIEK NDVEICMLKE LEEMGFKEID LNKEILRENE YDLEQSVDAL
601: CGVSEWDPIL EELQEMGFCD DVTNKKLLKK NNGSIKGVVM DLLTGEKEA

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.