CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12461
KRH37445

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	KRH12461	AT4G29820.1	21798944
AT4G24690.1	KRH37445	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57136	Soybean	nucleus	71.67	66.29
CDY24845	Canola	plastid	33.37	40.15
CDY08946	Canola	plastid	31.9	39.91
Bra010484.1-P	Field mustard	plastid	33.37	39.74
CDY03427	Canola	cytosol	33.99	39.15
CDY34302	Canola	plastid	33.25	38.46
Bra013825.1-P	Field mustard	plastid	33.0	38.18
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	33.0	38.07
CDX92649	Canola	cytosol	31.9	37.48
CDY11029	Canola	plastid	31.03	37.22
Bra019212.1-P	Field mustard	plastid	31.16	36.67
PGSC0003DMT400046670	Potato	nucleus	36.45	34.34
PGSC0003DMT400069639	Potato	nucleus	30.91	34.15
Solyc06g071770.2.1	Tomato	nucleus	30.91	34.06
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	35.34	33.22
GSMUA_AchrUn_...	Banana	extracellular	6.03	33.11
PGSC0003DMT400019556	Potato	extracellular	3.94	32.65
VIT_17s0000g09280.t01	Wine grape	nucleus	34.61	32.3
Os02t0593700-01	Rice	nucleus	30.66	29.47
GSMUA_Achr9P01840_001	Banana	nucleus	30.17	29.27
HORVU6Hr1G053250.1	Barley	cytosol	28.69	27.12
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	28.33	26.93
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	28.33	26.9
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	28.33	26.87
TraesCS6B01G236800.1	Wheat	cytosol	28.57	26.76
TraesCS6A01G208300.2	Wheat	nucleus	28.57	26.67
TraesCS6D01G191900.3	Wheat	nucleus	28.69	26.63
Zm00001d017072_P002	Maize	nucleus	27.22	26.25
EES07083	Sorghum	nucleus	27.34	26.15
HORVU2Hr1G082590.15	Barley	nucleus	28.94	25.91
Zm00001d040272_P001	Maize	plastid	3.82	25.83
Os04t0476800-01	Rice	nucleus	27.09	24.97
Zm00001d003300_P001	Maize	nucleus	22.04	23.96
KXG26554	Sorghum	nucleus	25.74	23.35

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100816395	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90
EMBL:ACUP02010337	EnsemblPlantsGene:GLYMA_17G084700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130
InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:IPR015940	InterPro:Ig-like_fold	UniProt:K7MKM1
EnsemblPlants:KRH03220	ProteinID:KRH03220	ProteinID:KRH03220.1	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom
PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745
PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666	SUPFAM:SSF54277	SUPFAM:SSF57850
InterPro:UBA	UniParc:UPI0002968B28	InterPro:Znf_ZZ	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:6533285..6537920

Molecular Weight (calculated)

88116.7 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.330

Length

812 amino acids

Sequence
(BLAST)

001: MDSALVIKVK YGDTLRRFSA RVDENNRLEL DMVDLRAKIC SIFSFSADAN LILRYVDEDG DLVTLVDDDE LRDVMRQQLK FLKIDVHMNN DSGGKSNAGS
101: SGSATPIESC PASSPFLFRN AMLREHLSKK AASSSPVVDN LADSILKMGL IQPGDAAGRS SKTSVPEEPI PKAMGPQSSH VDSASNASVN SDSATLLRSP
201: IPNPSLSGNA VKVDISCSVP EPICQFLSNL SSSNSASSSQ LPANLTDLIS LVPEPLREFL SNLSRSNAAS SNQLQHLTDL ISRKSVLNSH CQPHVSTGPF
301: TKNGVPEEPI TFEARGQQIP SADLAFNATQ QVEAGVAPVD LNVPPFDPFL AQFPDGDGKK GEMLAVNSSA SKDDNSGICS SSAGPNNNST QTTSLTSGAF
401: IDCPGSYYSW PPPLPGNYKM PPFKRSHSHT DAMSGMFHKG VRCDGCGVYP ITGPRFKSKV KENYDLCNIC FNEMGNGTDY IRMDHPASAR GPRCVYGHTK
501: NFPTLPPHIL KKGAILKHAR PRLDSRFILD VNVIDGTMMA PSTAFTKIWR IRNNGSIVWP KGTQLVWIGG DKFSDFHLVD LQVPEDGVPV EKELDIAVDF
601: TAPPLPGRYI SYWRMTTPSG HKFGQRVWVL IQVDASLQDS FYDTSQGLNL NIPLDISGSK GPQIIDINVQ PTEEDTVLQT RNPNAPIEPV NQMVDNEPRF
701: ELENEFPINE ATFVGPAASA PAATPVASSS VSYPIIDLSE TTPAVPSNQQ SSTVDVPSSS MGTGGINSVE ESLLKELEEM GFKQVDLNKE ILRNNEYDLY
801: QSLDFLCGVS EW

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.