Factsheet for Solyc06g071770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g041000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Solyc07g041000.2.1	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069639	Potato	nucleus	91.59	91.84
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	49.25	42.01
CDY08946	Canola	plastid	35.69	40.52
Bra010484.1-P	Field mustard	plastid	36.91	39.88
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	37.58	39.35
CDY24845	Canola	plastid	35.96	39.26
CDY34302	Canola	plastid	37.04	38.89
CDY03427	Canola	cytosol	37.04	38.72
Bra013825.1-P	Field mustard	plastid	36.63	38.46
CDY11029	Canola	plastid	35.28	38.4
Bra019212.1-P	Field mustard	plastid	35.55	37.97
CDX92649	Canola	cytosol	35.55	37.92
GSMUA_AchrUn_...	Banana	extracellular	7.33	36.49
VIT_17s0000g09280.t01	Wine grape	nucleus	40.16	34.02
KRH57136	Soybean	nucleus	39.48	33.14
GSMUA_Achr9P01840_001	Banana	nucleus	36.09	31.78
Os02t0593700-01	Rice	nucleus	36.09	31.48
KRH03220	Soybean	nucleus	34.06	30.91
Zm00001d040272_P001	Maize	plastid	5.02	30.83
EES07083	Sorghum	nucleus	34.19	29.68
Zm00001d017072_P002	Maize	nucleus	33.38	29.22
TraesCS6A01G208300.2	Wheat	nucleus	34.19	28.97
HORVU6Hr1G053250.1	Barley	cytosol	33.51	28.75
TraesCS6B01G236800.1	Wheat	cytosol	33.65	28.6
TraesCS6D01G191900.3	Wheat	nucleus	31.61	26.63
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	30.8	26.55
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	30.66	26.46
Zm00001d003300_P001	Maize	nucleus	26.59	26.24
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	30.39	26.17
Os04t0476800-01	Rice	nucleus	31.21	26.11
HORVU2Hr1G082590.15	Barley	nucleus	31.89	25.91
KXG26554	Sorghum	nucleus	31.34	25.81

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016236	GO:GO:0043130	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:Ig-like_fold	UniProt:K4C8P9	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564
PFAM:PF00569	PFAM:PF16158	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2
SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g071770.2
EnsemblPlants:Solyc06g071770.2.1	InterPro:UBA-like_sf	UniParc:UPI00027672D5	InterPro:Znf_ZZ	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:44201048..44205153

Molecular Weight (calculated)

80464.3 Da

IEP (calculated)

5.567

GRAVY (calculated)

-0.391

Length

737 amino acids

Sequence
(BLAST)

001: MESSIVIKVK YGETLRRFNA RVADDKLGLN IDGLKDKIFK LFNFPPDSEL TLTYIDEDGD VVTLVDDDDL QDITRQDLDP LRISVTLNSE KLSISSGTSS
101: GNSTSVRAPP TFPNINSSVS DLLKSLPKSK SKKILKHSAD MASKASSAAR EIAELSKALS VTSLSYLKQA CPVSGVPMGS VKSGEPSQAA NPEELTVKTA
201: GRPKSHTVSI NASELKSSQP DQNGIQCEPL SKSPKRNSSL VDGKKEEGNK FGDSHLVGKA LGNSDPSAST TGPKKTADKQ QTENHPGAEP VGVVGLSGKL
301: SGGFRSPISY WMPMVPVSND TIQPQYSTFR IPVKRSHNHS DGTGSIFHRG VRCDGCGVHP ITGPRFKSKV KEDYDLCSIC FAQMGIDADY VRMDRPVSYH
401: HPIAFKALHE PHDIFRGCGV KSPKLDSRFK HDVNVLDGTM MAPSTPFTKV WRMRNNGNIF WPQGTQLVWI GGDRLGDAVS VELQIPSFGL AVDHEFDVAV
501: DFRAPKLPGR YISFWRMALP SGEKFGQRVW VLIQVDFSMI PKKEFSYEAS QVLDLNLPPA GYDIAGSEYI NVNADMTIED IIADPKISNP ATGSVEPVVD
601: GNRNNEEFKS CISPSAAGSS ISYPIDLSEA APEVTSVAPP SVVEVQASPQ EDVEMSLLKE LDDMGFTQVN LNKEVLRMNE YNLEQSVADL CGVSEWDPIL
701: EELEEMGFHN KEINKTLLKK NNGSIKRVVM DLIAGEN

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.