Factsheet for Solyc07g041000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073910.2.1
Solyc02g083550.1.1
Solyc07g005320.2.1
Solyc10g080540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	Solyc01g073910.2.1	AT5G06710.1	21798944
AT4G29820.1	Solyc10g080540.1.1	AT5G06710.1	21798944
AT4G29820.1	Solyc07g005320.2.1	AT5G58040.1	16282318
AT4G29820.1	Solyc07g005320.2.1	AT5G58040.1	18479511
AT4G29820.1	Solyc02g083550.1.1	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046377	Potato	cytosol	92.57	92.57
GSMUA_Achr3P26260_001	Banana	cytosol	60.89	57.21
AT4G29820.1	Thale cress	cytosol	62.38	56.76
CDY43528	Canola	cytosol	58.42	54.38
Bra011138.1-P	Field mustard	cytosol	57.92	53.42
KRH37445	Soybean	nucleus	59.41	53.33
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	12.87	53.06
CDX88086	Canola	cytosol, mitochondrion, peroxisome	12.87	53.06
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	13.86	50.91
Solyc03g025880.2.1	Tomato	nucleus	49.01	49.5
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	51.49	49.06
TraesCS7D01G325500.1	Wheat	cytosol	51.49	49.06
VIT_11s0016g01760.t01	Wine grape	plastid	70.3	48.8
Zm00001d050266_P001	Maize	cytosol	53.47	48.21
Solyc01g009620.2.1	Tomato	nucleus	47.52	48.0
Solyc01g009630.2.1	Tomato	nucleus	47.52	48.0
OQU80396	Sorghum	cytosol	56.44	47.9
Os08t0398800-02	Rice	cytosol	50.99	45.58
TraesCS7B01G229300.1	Wheat	cytosol	50.49	41.63
CDX68589	Canola	plastid	57.43	40.85
CDX85073	Canola	cytosol, extracellular, nucleus	42.08	39.91
KRH12461	Soybean	plastid	57.92	39.53
HORVU7Hr1G078670.4	Barley	plastid	50.0	39.15

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR000086	UniProt:K4CDX7	InterPro:NUDIX_hydrolase-like_dom_sf
InterPro:NUDIX_hydrolase_dom	PFAM:PF13869	PIRSF:PIRSF017888	PFscan:PS51462	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1
SUPFAM:SSF55811	EnsemblPlantsGene:Solyc07g041000.2	EnsemblPlants:Solyc07g041000.2.1	UniParc:UPI000276B802	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:51489282..51492486

Molecular Weight (calculated)

23533.8 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.266

Length

202 amino acids

Sequence
(BLAST)

001: MAGGNLDVMD IYPLNHYYFG SKESLPLKEE ETLDHRIQRF KFNYNTHGIR TCVQAVLLVD LFKHPHLLLL QVRHSLYKLP GGRLRPGESE IECLRRKLSS
101: KLSMSEEYDR WEVGECLGMW WRPDFETLIY LVLPPNIKRP KECTKLFLVR LPESCKFIVP KNLKLIAVPL CQVHENFKTY GPIIAGVPQL LSKFSYNTPD
201: TD

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.