Factsheet for AT4G29820.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011138.1-P	Field mustard	cytosol	79.73	80.82
CDY43528	Canola	cytosol	78.38	80.18
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	14.41	65.31
CDX88086	Canola	cytosol, mitochondrion, peroxisome	14.41	65.31
PGSC0003DMT400046377	Potato	cytosol	58.56	64.36
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	15.77	63.64
Solyc07g041000.2.1	Tomato	cytosol	56.76	62.38
CDX68589	Canola	plastid	79.73	62.32
GSMUA_Achr3P26260_001	Banana	cytosol	58.11	60.0
KRH37445	Soybean	nucleus	60.36	59.56
TraesCS7D01G325500.1	Wheat	cytosol	52.7	55.19
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	52.7	55.19
CDX85073	Canola	cytosol, extracellular, nucleus	51.8	53.99
Zm00001d050266_P001	Maize	cytosol	53.15	52.68
AT4G25550.1	Thale cress	cytosol	47.3	52.5
Os08t0398800-02	Rice	cytosol	52.25	51.33
OQU80396	Sorghum	cytosol	53.6	50.0
TraesCS7B01G229300.1	Wheat	cytosol	52.7	47.76
VIT_11s0016g01760.t01	Wine grape	plastid	62.16	47.42
HORVU7Hr1G078670.4	Barley	plastid	54.05	46.51
KRH12461	Soybean	plastid	55.41	41.55

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EntrezGene:829104	ProteinID:AEE85682.1	ArrayExpress:AT4G29820	EnsemblPlantsGene:AT4G29820
RefSeq:AT4G29820	TAIR:AT4G29820	RefSeq:AT4G29820-TAIR-G	EnsemblPlants:AT4G29820.1	TAIR:AT4G29820.1	EMBL:AY048229
EMBL:AY085984	EMBL:AY091704	ProteinID:CAB43657.1	ProteinID:CAB79740.1	Symbol:CFIM-25	InterPro:Cleav_polyA_spec_factor_su5
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0046872	RefSeq:NP_567835.1	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869
PIRSF:PIRSF017888	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	UniProt:Q94AF0	SUPFAM:SSF55811	UniParc:UPI00000A625F	:

Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]

Coordinates

chr4:-:14595680..14597516

Molecular Weight (calculated)

25562.4 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.190

Length

222 amino acids

Sequence
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.