Factsheet for PGSC0003DMT400046377

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400009390
PGSC0003DMT400016146
PGSC0003DMT400060951

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	PGSC0003DMT400016146	AT5G06710.1	21798944
AT4G29820.1	PGSC0003DMT400060951	AT5G06710.1	21798944
AT4G29820.1	PGSC0003DMT400008250	AT5G58040.1	16282318
AT4G29820.1	PGSC0003DMT400008250	AT5G58040.1	18479511
AT4G29820.1	PGSC0003DMT400009390	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041000.2.1	Tomato	cytosol	92.57	92.57
AT4G29820.1	Thale cress	cytosol	64.36	58.56
GSMUA_Achr3P26260_001	Banana	cytosol	61.39	57.67
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	13.86	57.14
CDX88086	Canola	cytosol, mitochondrion, peroxisome	13.86	57.14
CDY43528	Canola	cytosol	60.4	56.22
Bra011138.1-P	Field mustard	cytosol	59.9	55.25
KRH37445	Soybean	nucleus	61.39	55.11
TraesCS7D01G325500.1	Wheat	cytosol	53.47	50.94
VIT_11s0016g01760.t01	Wine grape	plastid	73.27	50.86
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	52.97	50.47
PGSC0003DMT400037077	Potato	cytosol	15.35	50.0
Zm00001d050266_P001	Maize	cytosol	54.95	49.55
OQU80396	Sorghum	cytosol	57.92	49.16
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	13.37	49.09
Os08t0398800-02	Rice	cytosol	51.98	46.46
PGSC0003DMT400084196	Potato	peroxisome	14.85	44.78
PGSC0003DMT400037076	Potato	cytosol, plastid	25.25	44.74
TraesCS7B01G229300.1	Wheat	cytosol	52.48	43.27
CDX68589	Canola	plastid	59.41	42.25
CDX85073	Canola	cytosol, extracellular, nucleus	43.07	40.85
HORVU7Hr1G078670.4	Barley	plastid	51.49	40.31
KRH12461	Soybean	plastid	58.91	40.2

Protein Annotations

EntrezGene:102593421	MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR000086	UniProt:M1BJ03
InterPro:NUDIX_hydrolase-like_dom_sf	InterPro:NUDIX_hydrolase_dom	PFAM:PF13869	EnsemblPlantsGene:PGSC0003DMG400018003	PGSC:PGSC0003DMG400018003	EnsemblPlants:PGSC0003DMT400046377
PIRSF:PIRSF017888	PFscan:PS51462	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	SUPFAM:SSF55811	UniParc:UPI000295E064
RefSeq:XP_006342337.1	SEG:seg	:	:	:	:

Description

Pre-mRNA cleavage factor im, 25kD subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400018003]

Coordinates

chr7:-:37160931..37164114

Molecular Weight (calculated)

23527.7 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.315

Length

202 amino acids

Sequence
(BLAST)

001: MADGNVDVLD IYPLNHYYFG SKESLPLKEE ETLDHRIQRL KFNYNTHGIR TCVQAVILVD LFKHPHLLLL QVRHSMYKLP GGRLRPGESE IECLRRKLSS
101: KLSMSEEDDR WEVGECLGMW WRPDFETLIY PFLPPNIKRP KECTKLFLVR LPESCKFIVP KNLKLIAVPL CQVHENFKTY GPIIAGVPQL LSKFSYNTPD
201: TD

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.