CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92834
EER98990
EES11880
EES14354
KXG25294
KXG37677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	EER98990	AT5G06710.1	21798944
AT4G29820.1	KXG25294	AT5G06710.1	21798944
AT4G29820.1	KXG37677	AT5G58040.1	16282318
AT4G29820.1	KXG37677	AT5G58040.1	18479511
AT4G29820.1	EER92834	AT5G66110.1	21798944
AT4G29820.1	EES11880	AT5G66110.1	21798944
AT4G29820.1	EES14354	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050266_P001	Maize	cytosol	75.63	80.36
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	65.97	74.06
TraesCS7D01G325500.1	Wheat	cytosol	64.71	72.64
Os08t0398800-02	Rice	cytosol	68.07	71.68
TraesCS7B01G229300.1	Wheat	cytosol	65.97	64.08
GSMUA_Achr3P26260_001	Banana	cytosol	56.3	62.33
HORVU7Hr1G078670.4	Barley	plastid	65.13	60.08
PGSC0003DMT400046377	Potato	cytosol	49.16	57.92
CDY43528	Canola	cytosol	52.1	57.14
Solyc07g041000.2.1	Tomato	cytosol	47.9	56.44
Bra011138.1-P	Field mustard	cytosol	50.84	55.25
AT4G29820.1	Thale cress	cytosol	50.0	53.6
KRH37445	Soybean	nucleus	47.48	50.22
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	10.92	47.27
CDX68589	Canola	plastid	51.68	43.31
VIT_11s0016g01760.t01	Wine grape	plastid	50.84	41.58
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	7.98	38.78
CDX88086	Canola	cytosol, mitochondrion, peroxisome	7.98	38.78
CDX85073	Canola	cytosol, extracellular, nucleus	33.19	37.09
KRH12461	Soybean	plastid	45.38	36.49

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EntrezGene:8070039	UniProt:A0A1Z5RAI6	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlants:OQU80396	ProteinID:OQU80396	ProteinID:OQU80396.1
PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	EnsemblPlantsGene:SORBI_3007G121300	unigene:Sbi.6946
UniParc:UPI000B8B9ECD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:52245948..52247392

Molecular Weight (calculated)

26327.9 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.011

Length

238 amino acids

Sequence
(BLAST)

001: MGLEMEVMSE AAAPTTAVVP AAAAREPGVD VDIYPLTRYY FGARDAAAAV PRGLETAADR ALRLKANFAA RGLRTSVHGV LLVELFDHPH LLLLQVRNSS
101: FLLPGGRLRP GEEEVQGLKR KLSSKLSFVD ADDDQTIEEE DDWQVGNHAI GECIGMWWRS EFEAIPFPYM PPSFRAPKEC IKLFLVRLPM SRQFIVPRNM
201: KLLAVPLSQV HGNAQVYGPI ISGIPNLLSK FSFNVISD

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.