CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70076
CDX78884
CDX81016
CDX88005
CDX88655
CDX98948
CDY07874
CDY11833
CDY43886
CDY55775
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	CDX70076	AT5G06710.1	21798944
AT4G29820.1	CDX78884	AT5G06710.1	21798944
AT4G29820.1	CDX81016	AT5G06710.1	21798944
AT4G29820.1	CDX98948	AT5G06710.1	21798944
AT4G29820.1	CDY55775	AT5G06710.1	21798944
AT4G29820.1	CDX88655	AT5G58040.1	16282318
AT4G29820.1	CDY11833	AT5G58040.1	16282318
AT4G29820.1	CDY43886	AT5G58040.1	16282318
AT4G29820.1	CDY70580	AT5G58040.1	16282318
AT4G29820.1	CDX88655	AT5G58040.1	18479511
AT4G29820.1	CDY11833	AT5G58040.1	18479511
AT4G29820.1	CDY43886	AT5G58040.1	18479511
AT4G29820.1	CDY70580	AT5G58040.1	18479511
AT4G29820.1	CDX88005	AT5G66110.1	21798944
AT4G29820.1	CDY07874	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011138.1-P	Field mustard	cytosol	93.09	92.24
AT4G29820.1	Thale cress	cytosol	80.18	78.38
CDX68589	Canola	plastid	92.63	70.77
CDX88086	Canola	cytosol, mitochondrion, peroxisome	15.21	67.35
PGSC0003DMT400046377	Potato	cytosol	56.22	60.4
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	15.21	60.0
KRH37445	Soybean	nucleus	61.29	59.11
GSMUA_Achr3P26260_001	Banana	cytosol	58.06	58.6
Solyc07g041000.2.1	Tomato	cytosol	54.38	58.42
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	54.38	55.66
TraesCS7D01G325500.1	Wheat	cytosol	53.92	55.19
CDX85073	Canola	cytosol, extracellular, nucleus	53.92	54.93
Zm00001d050266_P001	Maize	cytosol	55.3	53.57
CDY50198	Canola	cytosol	48.85	53.0
CDY54086	Canola	cytosol	48.85	53.0
CDY52363	Canola	cytosol	48.85	53.0
CDX89414	Canola	cytosol	48.39	52.5
CDX92717	Canola	cytosol	48.39	52.5
OQU80396	Sorghum	cytosol	57.14	52.1
Os08t0398800-02	Rice	cytosol	53.46	51.33
TraesCS7B01G229300.1	Wheat	cytosol	54.38	48.16
VIT_11s0016g01760.t01	Wine grape	plastid	61.29	45.7
CDX94441	Canola	cytosol	48.39	44.49
HORVU7Hr1G078670.4	Barley	plastid	52.53	44.19
KRH12461	Soybean	plastid	54.84	40.2

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	GO:A0A078I378	UniProt:A0A078I378	EnsemblPlants:CDY43528	ProteinID:CDY43528
ProteinID:CDY43528.1	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00076814001	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888
PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	SUPFAM:SSF55811	UniParc:UPI0004EE181F	:	:

Description

BnaA01g07160DBnaA01g07160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I378]

Coordinates

chrLK032560:-:138796..140304

Molecular Weight (calculated)

24700.3 Da

IEP (calculated)

8.869

GRAVY (calculated)

-0.118

Length

217 amino acids

Sequence
(BLAST)

001: MGEEAPVFDT SEENATRINH GSVVDLYPLS SYYFGSRDAV RVKDEMIADR VVRLKSDYAA HGLRTCVEAV LLVELFKHPH VLLLQYRNSI FKLPGGRLRP
101: GESDVDGLKR KLASKLSVNE NVLLPGLEVG ECIGKWWRPN FETLMYPFLP PNVKHPKECL KLFLGRLALH QQFVVPKNFK LLAVPLCQLH ENEKTYGPII
201: SQIPKLLSKF SFNMLEI

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.