Factsheet for Solyc01g009620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021760.2.1
Solyc02g070240.2.1
Solyc07g005320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	Solyc02g021760.2.1	AT1G30460.1	18479511
AT4G25550.1	Solyc02g070240.2.1	AT1G30460.1	18479511
AT4G25550.1	Solyc07g005320.2.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009630.2.1	Tomato	nucleus	96.5	96.5
PGSC0003DMT400084196	Potato	peroxisome	31.5	94.03
KRH35335	Soybean	cytosol	33.5	91.78
KRG91493	Soybean	endoplasmic reticulum, nucleus	90.0	90.0
Solyc03g025880.2.1	Tomato	nucleus	89.5	89.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	86.0	86.0
CDX92717	Canola	cytosol	85.0	85.0
Bra019155.1-P	Field mustard	cytosol	84.5	84.5
CDY50198	Canola	cytosol	84.5	84.5
Bra013899.1-P	Field mustard	cytosol	84.0	84.0
CDX89414	Canola	cytosol	84.0	84.0
CDY52363	Canola	cytosol	84.0	84.0
CDY54086	Canola	cytosol	84.0	84.0
AT4G25550.1	Thale cress	cytosol	84.0	84.0
TraesCS1B01G366600.1	Wheat	cytosol	85.0	83.74
HORVU2Hr1G124110.1	Barley	cytosol	85.0	83.74
TraesCS1D01G355400.1	Wheat	cytosol	85.0	83.74
TraesCS2A01G580600.1	Wheat	nucleus	85.0	83.74
TraesCS2B01G608100.1	Wheat	cytosol	85.0	83.74
TraesCS2D01G592500.2	Wheat	cytosol	85.0	83.74
TraesCS1A01G355100.1	Wheat	cytosol	85.0	83.74
HORVU1Hr1G081030.2	Barley	cytosol	39.5	74.53
CDX94441	Canola	cytosol	83.0	70.34
GSMUA_AchrUn_...	Banana	plastid	25.0	56.18
HORVU0Hr1G001450.1	Barley	plastid	47.0	51.93
Solyc07g041000.2.1	Tomato	cytosol	48.0	47.52
Bra010457.1-P	Field mustard	cytosol	84.0	42.75

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:K4ATF7	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	EnsemblPlantsGene:Solyc01g009620.2
EnsemblPlants:Solyc01g009620.2.1	UniParc:UPI0002763733	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:3852922..3862672

Molecular Weight (calculated)

22953.1 Da

IEP (calculated)

9.814

GRAVY (calculated)

-0.368

Length

200 amino acids

Sequence
(BLAST)

001: MVSSAIVNTY PLSSYTFGTK EHKMEKDSSV ADRLARMKVN YMREGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEIEG LKRKLSSKLA
101: ANPPANPPNW KIGECVATWW RPNFETIMYP YCPPHITKPK ECKKLYLVHL SEREFFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRLQFNMINQ

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.