Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g04600.t01 | |
| VIT_11s0037g00130.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25550.1 | VIT_10s0003g04600.t01 | AT1G30460.1 | 18479511 |
| AT4G25550.1 | VIT_11s0037g00130.t01 | AT5G58040.1 | 18479511 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35335 | Soybean | cytosol | 33.5 | 91.78 |
| Solyc03g025880.2.1 | Tomato | nucleus | 90.5 | 90.5 |
| KRG91493 | Soybean | endoplasmic reticulum, nucleus | 90.0 | 90.0 |
| PGSC0003DMT400037076 | Potato | cytosol, plastid | 51.0 | 89.47 |
| PGSC0003DMT400037077 | Potato | cytosol | 27.5 | 88.71 |
| Solyc01g009630.2.1 | Tomato | nucleus | 87.0 | 87.0 |
| PGSC0003DMT400084196 | Potato | peroxisome | 29.0 | 86.57 |
| TraesCS2D01G592500.2 | Wheat | cytosol | 87.5 | 86.21 |
| HORVU2Hr1G124110.1 | Barley | cytosol | 87.5 | 86.21 |
| TraesCS2B01G608100.1 | Wheat | cytosol | 87.5 | 86.21 |
| TraesCS2A01G580600.1 | Wheat | nucleus | 87.5 | 86.21 |
| Solyc01g009620.2.1 | Tomato | nucleus | 86.0 | 86.0 |
| CDY52363 | Canola | cytosol | 85.5 | 85.5 |
| CDY54086 | Canola | cytosol | 85.5 | 85.5 |
| TraesCS1D01G355400.1 | Wheat | cytosol | 86.5 | 85.22 |
| TraesCS1A01G355100.1 | Wheat | cytosol | 86.5 | 85.22 |
| TraesCS1B01G366600.1 | Wheat | cytosol | 86.5 | 85.22 |
| CDX92717 | Canola | cytosol | 85.0 | 85.0 |
| CDX89414 | Canola | cytosol | 85.0 | 85.0 |
| Bra013899.1-P | Field mustard | cytosol | 85.0 | 85.0 |
| CDY50198 | Canola | cytosol | 84.5 | 84.5 |
| Bra019155.1-P | Field mustard | cytosol | 84.5 | 84.5 |
| AT4G25550.1 | Thale cress | cytosol | 84.0 | 84.0 |
| VIT_15s0046g03350.t01 | Wine grape | cytosol | 93.5 | 79.57 |
| HORVU1Hr1G081030.2 | Barley | cytosol | 41.0 | 77.36 |
| CDX94441 | Canola | cytosol | 84.0 | 71.19 |
| GSMUA_AchrUn_... | Banana | plastid | 23.5 | 52.81 |
| HORVU0Hr1G001450.1 | Barley | plastid | 47.0 | 51.93 |
| Bra010457.1-P | Field mustard | cytosol | 85.5 | 43.51 |
| VIT_11s0016g01760.t01 | Wine grape | plastid | 53.5 | 36.77 |
Protein Annotations
| EntrezGene:100266110 | wikigene:100266110 | MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | UniProt:A5B6Q5 | EMBL:AM448467 |
| ProteinID:CAN61008 | ProteinID:CAN61008.1 | ProteinID:CBI22757 | ProteinID:CBI22757.3 | InterPro:Cleav_polyA_spec_factor_su5 | EMBL:FN595243 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 |
| GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EntrezGene:LOC100266110 | wikigene:LOC100266110 |
| PFAM:PF13869 | PIRSF:PIRSF017888 | PANTHER:PTHR13047 | UniParc:UPI0001520259 | ArrayExpress:VIT_16s0050g00030 | EnsemblPlantsGene:VIT_16s0050g00030 |
| EnsemblPlants:VIT_16s0050g00030.t01 | unigene:Vvi.8939 | RefSeq:XP_002267257 | RefSeq:XP_002267257.1 | : | : |
Description
No Description!
Coordinates
chr16:+:16882312..16895131
Molecular Weight (calculated)
22901.2 Da
IEP (calculated)
9.527
GRAVY (calculated)
-0.218
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTSPVVNTY PLSSYTFGTK EPKMEKDTSV ADRLARMRVN YMKEGMRTTV DAILLVQEHT HPHILLLQIG NTFCKLPGGR LKPGENEIEG LKRKLSSKLA
101: ANSPGLQPDW QIGECVAIWW RPNFETVMYP YCPPHITKPK ECKKLFIVHL SEREYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPLHL SRFQFNMIAA
101: ANSPGLQPDW QIGECVAIWW RPNFETVMYP YCPPHITKPK ECKKLFIVHL SEREYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPLHL SRFQFNMIAA
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.