Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0050g00030.t01 | Wine grape | cytosol, plastid | 79.57 | 93.5 |
| HORVU2Hr1G124110.1 | Barley | cytosol | 76.17 | 88.18 |
| TraesCS2A01G580600.1 | Wheat | nucleus | 76.17 | 88.18 |
| TraesCS2B01G608100.1 | Wheat | cytosol | 76.17 | 88.18 |
| TraesCS2D01G592500.2 | Wheat | cytosol | 76.17 | 88.18 |
| TraesCS1A01G355100.1 | Wheat | cytosol | 75.32 | 87.19 |
| TraesCS1B01G366600.1 | Wheat | cytosol | 75.32 | 87.19 |
| TraesCS1D01G355400.1 | Wheat | cytosol | 75.32 | 87.19 |
| HORVU1Hr1G081030.2 | Barley | cytosol | 35.32 | 78.3 |
| GSMUA_AchrUn_... | Banana | plastid | 22.13 | 58.43 |
| HORVU0Hr1G001450.1 | Barley | plastid | 42.55 | 55.25 |
| VIT_11s0016g01760.t01 | Wine grape | plastid | 46.38 | 37.46 |
Protein Annotations
| EntrezGene:100261950 | wikigene:100261950 | MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | ProteinID:CCB62381 | ProteinID:CCB62381.1 |
| InterPro:Cleav_polyA_spec_factor_su5 | UniProt:F6I6I8 | EMBL:FN596755 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | EntrezGene:LOC100261950 | wikigene:LOC100261950 | PFAM:PF13869 | PIRSF:PIRSF017888 | PANTHER:PTHR13047 |
| UniParc:UPI000210AB44 | ArrayExpress:VIT_15s0046g03350 | EnsemblPlantsGene:VIT_15s0046g03350 | EnsemblPlants:VIT_15s0046g03350.t01 | RefSeq:XP_002269748 | RefSeq:XP_002269748.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr15:-:19972530..19977797
Molecular Weight (calculated)
27140.8 Da
IEP (calculated)
7.893
GRAVY (calculated)
-0.409
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MYFHWRNTYF LSEGENDGGC QSESDSTEEV EARREMVTSP VVNTYPLSSY TFGTKEPKME KDTSVADRLA RMKVNYMKEG MRTSVEAILL VQEHNHPHIL
101: LLQIGNTFCK LPGGRLKPGE NEIEGLKRKL SSKLAANSLA LQPDWQIGEC VAIWWRPNFE TIMYPYCPPH ITKPKECKKL FIVHLSEREY FAVPKNLKLL
201: AVPLFELYDN VQRYGPVIST IPQQLSRFQF NMMTV
101: LLQIGNTFCK LPGGRLKPGE NEIEGLKRKL SSKLAANSLA LQPDWQIGEC VAIWWRPNFE TIMYPYCPPH ITKPKECKKL FIVHLSEREY FAVPKNLKLL
201: AVPLFELYDN VQRYGPVIST IPQQLSRFQF NMMTV
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.