Factsheet for VIT_10s0003g04600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05780.t01
VIT_05s0077g00650.t01
VIT_10s0003g04600.t01
VIT_10s0116g00720.t01
VIT_11s0037g00130.t01
VIT_11s0065g00710.t01
VIT_16s0022g01860.t01
VIT_16s0050g00030.t01
VIT_16s0050g00590.t01
VIT_17s0000g05080.t01
VIT_18s0086g00620.t01
VIT_18s0086g00630.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	VIT_11s0065g00710.t01	AT1G17760.1	18479511
AT1G30460.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT1G30460.1	VIT_18s0086g00620.t01	AT1G66500.1	18479511
AT1G30460.1	VIT_18s0086g00630.t01	AT1G66500.1	18479511
AT1G30460.1	VIT_01s0011g05780.t01	AT2G01730.1	16897494
AT1G30460.1	VIT_05s0077g00650.t01	AT3G06560.1	16897494
AT1G30460.1	VIT_05s0077g00650.t01	AT3G06560.1	18479511
AT1G30460.1	VIT_10s0116g00720.t01	AT4G04885.1	18479511
AT1G30460.1	VIT_16s0050g00030.t01	AT4G25550.1	18479511
AT1G30460.1	VIT_16s0050g00590.t01	AT5G23880.1	16897494
AT1G30460.1	VIT_16s0050g00590.t01	AT5G23880.1	18479511
AT1G30460.1	VIT_16s0022g01860.t01	AT5G51660.1	16897494
AT1G30460.1	VIT_16s0022g01860.t01	AT5G51660.1	18479511
AT1G30460.1	VIT_11s0037g00130.t01	AT5G58040.1	16282318
AT1G30460.1	VIT_11s0037g00130.t01	AT5G58040.1	18479511
AT1G30460.1	VIT_17s0000g05080.t01	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36762	Soybean	nucleus	73.25	72.39
KRH11760	Soybean	nucleus	73.55	71.64
Solyc02g070240.2.1	Tomato	nucleus	67.01	67.21
Solyc02g021760.2.1	Tomato	nucleus	67.01	65.46
AT1G30460.1	Thale cress	nucleus	61.22	65.29
GSMUA_Achr9P30440_001	Banana	nucleus	63.6	65.14
GSMUA_Achr6P19820_001	Banana	nucleus	66.57	64.74
CDX98205	Canola	nucleus	51.41	63.6
Bra014881.1-P	Field mustard	nucleus	54.23	62.93
Bra010767.1-P	Field mustard	nucleus	58.25	62.22
EER88812	Sorghum	cytosol, nucleus, peroxisome	58.84	61.4
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	58.1	61.09
TraesCS7D01G450100.1	Wheat	nucleus	57.8	59.85
TraesCS7A01G461800.1	Wheat	nucleus	57.65	59.69
HORVU7Hr1G106340.5	Barley	cytosol	57.5	59.63
TraesCS7B01G363200.2	Wheat	nucleus	57.8	59.57
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	56.76	59.04
CDX77591	Canola	nucleus	51.86	58.66
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	59.29	58.16
CDY12057	Canola	cytosol, nucleus, peroxisome	54.53	55.95
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	21.4	54.14
Zm00001d014379_P001	Maize	nucleus	19.76	54.06
Zm00001d036595_P001	Maize	nucleus	19.47	52.19
VIT_02s0025g04760.t01	Wine grape	nucleus	13.82	25.14

Protein Annotations

EntrezGene:100253258	wikigene:100253258	MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	EMBL:AM458850
ProteinID:CAN61344	ProteinID:CAN61344.1	ProteinID:CCB55847	ProteinID:CCB55847.1	UniProt:F6HLX2	EMBL:FN595992
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR007275	EntrezGene:LOC100253258	wikigene:LOC100253258	PFAM:PF04146	PFscan:PS50103	PFscan:PS50882
PANTHER:PTHR12357	PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0001984170	ArrayExpress:VIT_10s0003g04600
EnsemblPlantsGene:VIT_10s0003g04600	EnsemblPlants:VIT_10s0003g04600.t01	unigene:Vvi.22239	RefSeq:XP_002281594	RefSeq:XP_002281594.1	InterPro:YTH_domain
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:8166203..8208389

Molecular Weight (calculated)

73830.5 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.757

Length

673 amino acids

Sequence
(BLAST)

001: MEDAEGVLSF DFEGGLDAAP GTAATVAPLI QSDATAAAAA PSSVVSAEPT PGGAPGRRSF RQTVCRHWLR SLCMKGDACG FLHQYDKSRM PVCRFFRLYG
101: ECREQDCVYK HTNEDIKECN MYKLGFCPNG SDCRYRHAKL PGPPPTMEEV FQKIQQLSSF NYGSSNRFYQ NRNPYNQQTE KSQILQGSNA VNLGTVAKSS
201: TTEAINVQQQ QVQPPQQQVS QTPMQNLPNG LPNQANKTAS PLPQGISRYF IVKSCNRENL ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH
301: FQGCAKMTSK IGGFVGGGNW KYAHGTAHYG RNFSVKWLKL CELSFHKTRH LRNPYNENLP VKISRDCQEL EPSIGEQLAS LLYLEPDSEL MAISLAAESK
401: REEEKAKGVN PDNGGENPDI VPFEDNEEEE EEESEEEEES FGQALGPAAQ GRGRGRGIMW PPHMPLARGA RPIPSMRGFP PVMMGADGFS YSAVPPDGFA
501: MPDIFGVGPR AFPPYGPRFS GDFTGPASGM MFPGRGQPGA VFPASGYGMM MGPGRAPFMG GMGVPAAAPT RAGRPVGMPP MFPPPPPPNS QNNRTKRDQR
601: TPVNDRNDRY SGGSDQGRGQ DMAGPDDETQ YLQGLKSQQD DQFGGGNSFR NDESESEDEA PRRSRHGEGK KKR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.