Factsheet for VIT_18s0086g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04600.t01
VIT_10s0116g00720.t01
VIT_11s0065g00710.t01
VIT_18s0086g00620.t01
VIT_18s0086g00630.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66500.1	VIT_11s0065g00710.t01	AT1G17760.1	18479511
AT1G66500.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT1G66500.1	VIT_10s0116g00720.t01	AT4G04885.1	18479511
AT1G66500.1	VIT_18s0086g00620.t01	AT5G43620.1	18479511
AT1G66500.1	VIT_18s0086g00630.t01	AT5G43620.1	18479511
AT5G43620.1	VIT_11s0065g00710.t01	AT1G17760.1	18479511
AT5G43620.1	VIT_18s0086g00620.t01	AT1G66500.1	18479511
AT5G43620.1	VIT_18s0086g00630.t01	AT1G66500.1	18479511
AT5G43620.1	VIT_10s0116g00720.t01	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004171.1-P	Field mustard	nucleus	44.29	13.84
AT5G43620.1	Thale cress	nucleus	48.57	8.29
AT1G66500.1	Thale cress	nucleus	48.57	8.17
CDX96143	Canola	nucleus	44.29	7.56
CDY36205	Canola	nucleus	41.43	6.94
VIT_10s0116g00720.t01	Wine grape	nucleus	85.71	6.23
GSMUA_Achr6P18930_001	Banana	nucleus	64.29	5.47
TraesCS7D01G290300.2	Wheat	nucleus	60.0	4.51
OQU80002	Sorghum	nucleus	61.43	4.5
TraesCS7A01G294500.5	Wheat	nucleus	60.0	4.5
Zm00001d049442_P009	Maize	nucleus	61.43	4.45
Os08t0187700-01	Rice	cytosol	61.43	4.43
Zm00001d000023_P004	Maize	nucleus	60.0	4.36
HORVU7Hr1G069840.2	Barley	plastid	60.0	4.28
TraesCS7B01G181900.3	Wheat	nucleus	58.57	4.11
VIT_08s0007g03880.t01	Wine grape	nucleus	38.57	2.49
VIT_18s0086g00620.t01	Wine grape	extracellular	1.43	0.73

Protein Annotations

MapMan:16.2.1.5.2	ProteinID:CCB60831	ProteinID:CCB60831.1	UniProt:F6I1L4	EMBL:FN596511	GO:GO:0000993
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737
GO:GO:0005849	GO:GO:0006139	GO:GO:0006369	GO:GO:0006378	GO:GO:0006379	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR013087	ScanProsite:PS00028	PANTHER:PTHR15921
UniParc:UPI0002109983	ArrayExpress:VIT_18s0086g00630	EnsemblPlantsGene:VIT_18s0086g00630	EnsemblPlants:VIT_18s0086g00630.t01	InterPro:Znf_C2H2_type	:

Description

No Description!

Coordinates

chr18:-:17967444..17967694

Molecular Weight (calculated)

8092.6 Da

IEP (calculated)

6.061

GRAVY (calculated)

-0.320

Length

70 amino acids

Sequence
(BLAST)

1: MAQGLISLAK QPAFQDSVGI EFNVDLFKVR HESTISTLYD DMSRQCITCG FQFKCQEEHI SHMDWHVTKN

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.