Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G66500.1 | Thale cress | nucleus | 85.61 | 84.38 |
| Bra004171.1-P | Field mustard | nucleus | 30.73 | 56.25 |
| VIT_18s0086g00630.t01 | Wine grape | cytosol | 8.29 | 48.57 |
| CDX96143 | Canola | nucleus | 41.95 | 41.95 |
| CDY36205 | Canola | nucleus | 39.76 | 39.0 |
| VIT_18s0086g00620.t01 | Wine grape | extracellular | 9.51 | 28.47 |
| AT4G04885.1 | Thale cress | nucleus | 25.12 | 12.75 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 23.66 | 11.8 |
| TraesCS7D01G290300.2 | Wheat | nucleus | 23.9 | 10.52 |
| TraesCS7A01G294500.5 | Wheat | nucleus | 23.9 | 10.5 |
| Os08t0187700-01 | Rice | cytosol | 24.63 | 10.4 |
| HORVU7Hr1G069840.2 | Barley | plastid | 24.39 | 10.18 |
| Zm00001d000023_P004 | Maize | nucleus | 23.66 | 10.06 |
| OQU80002 | Sorghum | nucleus | 22.93 | 9.84 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 23.41 | 9.62 |
| Zm00001d049442_P009 | Maize | nucleus | 22.68 | 9.62 |
| AT2G36480.1 | Thale cress | nucleus | 21.95 | 9.35 |
Protein Annotations
| MapMan:16.2.1.5.2 | EntrezGene:834382 | ProteinID:AED94988.1 | EMBL:AK175583 | ArrayExpress:AT5G43620 | EnsemblPlantsGene:AT5G43620 |
| RefSeq:AT5G43620 | TAIR:AT5G43620 | RefSeq:AT5G43620-TAIR-G | EnsemblPlants:AT5G43620.1 | TAIR:AT5G43620.1 | Unigene:At.50501 |
| ProteinID:BAB11625.1 | EMBL:BT023453 | EMBL:BT025626 | ncoils:Coil | GO:GO:0000993 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005849 |
| GO:GO:0006139 | GO:GO:0006369 | GO:GO:0006378 | GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR013087 | RefSeq:NP_199175.1 | PO:PO:0000293 |
| ScanProsite:PS00028 | PANTHER:PTHR15921 | UniProt:Q9FIX8 | UniParc:UPI00000A1F3F | InterPro:Znf_C2H2_type | SEG:seg |
Description
PCFS5Polyadenylation and cleavage factor homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX8]
Coordinates
chr5:+:17522486..17524003
Molecular Weight (calculated)
46051.0 Da
IEP (calculated)
9.266
GRAVY (calculated)
-0.795
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNGSFSAQ RNANAGTTMK RRNDNRGYGG GIGCYQEERN RYAPPQKRFR SQLQQQFRSG HNPLYHYGSN TNNNVSRVSS QSYNNYGVDV IASNSSFALP
101: NNDSNTNNYQ KPFVVYGNPN PQIVPLPLPY RKLDPLDSLP QWVPNSTPNY PVRSSNFVPN TPDFTNVQNP MNHSNMVSVV SQSMHQPIVL SKELTDLLSL
201: LNNEKEKKTS EASNNDSLPV GLSFDNPSSL NVRHESVIKS LYSDMPRQCT SCGVRFKCQE EHSKHMDWHV RKNRSVKTTT RLGQQPKKSR GWLASASLWL
301: CAPTGGGTVE VASFGGGEMQ KKNEKDQVQK QHMVPADEDQ KNCALCVEPF EEFFSHEADD WMYKDAVYLT KNGRIVHVKC MPEPRPAKDL REPSRVMSVT
401: VPSVAKAILC
101: NNDSNTNNYQ KPFVVYGNPN PQIVPLPLPY RKLDPLDSLP QWVPNSTPNY PVRSSNFVPN TPDFTNVQNP MNHSNMVSVV SQSMHQPIVL SKELTDLLSL
201: LNNEKEKKTS EASNNDSLPV GLSFDNPSSL NVRHESVIKS LYSDMPRQCT SCGVRFKCQE EHSKHMDWHV RKNRSVKTTT RLGQQPKKSR GWLASASLWL
301: CAPTGGGTVE VASFGGGEMQ KKNEKDQVQK QHMVPADEDQ KNCALCVEPF EEFFSHEADD WMYKDAVYLT KNGRIVHVKC MPEPRPAKDL REPSRVMSVT
401: VPSVAKAILC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.