Factsheet for Bra004171.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004171.1-P
Bra010767.1-P
Bra014881.1-P
Bra016588.1-P
Bra029526.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66500.1	Bra016588.1-P	AT1G17760.1	18479511
AT1G66500.1	Bra010767.1-P	AT1G30460.1	18479511
AT1G66500.1	Bra014881.1-P	AT1G30460.1	18479511
AT1G66500.1	Bra029526.1-P	AT4G04885.1	18479511
AT1G66500.1	Bra004171.1-P	AT5G43620.1	18479511
AT5G43620.1	Bra016588.1-P	AT1G17760.1	18479511
AT5G43620.1	Bra004171.1-P	AT1G66500.1	18479511
AT5G43620.1	Bra029526.1-P	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96143	Canola	nucleus	88.84	48.54
VIT_18s0086g00630.t01	Wine grape	cytosol	13.84	44.29
AT5G43620.1	Thale cress	nucleus	56.25	30.73
AT1G66500.1	Thale cress	nucleus	56.25	30.29
VIT_18s0086g00620.t01	Wine grape	extracellular	13.84	22.63
Bra029526.1-P	Field mustard	nucleus, plastid	37.95	11.01
GSMUA_Achr6P18930_001	Banana	nucleus	37.05	10.1
Zm00001d000023_P004	Maize	nucleus	36.61	8.51
TraesCS7D01G290300.2	Wheat	nucleus	34.82	8.37
TraesCS7A01G294500.5	Wheat	nucleus	34.82	8.36
Zm00001d049442_P009	Maize	nucleus	35.27	8.17
OQU80002	Sorghum	nucleus	34.82	8.17
HORVU7Hr1G069840.2	Barley	plastid	35.27	8.04
Os08t0187700-01	Rice	cytosol	34.38	7.93
TraesCS7B01G181900.3	Wheat	nucleus	33.93	7.62
Bra005265.1-P	Field mustard	nucleus, plastid	29.91	6.71

Protein Annotations

EnsemblPlants:Bra004171.1	EnsemblPlants:Bra004171.1-P	EnsemblPlantsGene:Bra004171	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR15921	ScanProsite:PS00028	SEG:seg	UniParc:UPI00025414FE
UniProt:M4CIY7	MapMan:16.2.1.5.2	:	:	:	:

Description

AT1G66500 (E=3e-051) | zinc finger (C2H2-type) family protein

Coordinates

chrA07:-:17203488..17204162

Molecular Weight (calculated)

25151.9 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.637

Length

224 amino acids

Sequence
(BLAST)

001: MVSVVSQSLP QQPVVSKELA DLLSVLNNNE KEKECDLGLD FDKINLNVRH ESVVKSLYSD MPRQCSSCGV RFKCQEEHSK HMDWHVRKNR MAKDATKAAT
101: TTRASQKPKK SRDWFASLSL WLSAATGAAI EGAKPLFGET QKTKEEEKQQ QRYVPADENQ KMCALCLESL EEFFSHEEDD WMYRDAAYLN MNGSGPIVHV
201: NCMPEPRKGP AKGLTKPVAS AVAC

Best Arabidopsis Sequence Match ( AT1G66500.1 )
(BLAST)

001: MASNGSFSAQ RNANARTTMK RRSDNRGYGG GIGGYQEETN RYAPPQKRFR SQAQQQFRSG HNPLYHHHGS NNNNVSRVSS QSYNNCGVDV IASNSSFALR
101: NNDSNTNNYQ KPFVAGYGNP NPQIVPLPLP YRKLDDNLSL DSLPDWVPNS RTLTPNYPVR SSNFVPNTPV FTNVQNPMNH SNMVSVVSQS MHQPIVLSKE
201: LTDLLSLLNN EKEKKTLEAS NSDSLPVGLS FDNPSSLNVR HESVIKSLYS DMPRQCSSCG LRFKCQEEHS KHMDWHVRKN RSVKTTTRLG QQPKKSRGWL
301: ASASLWLCAA TGGETVEVAS FGGEMQKKKG KDEEPKQLMV PADEDQKNCA LCVEPFEEFF SHEDDDWMYK DAVYLTKNGR IVHVKCMPEP RPAKDLREPS
401: RVMSVTVPSV AKAIAC

Arabidopsis Description

PCFS1Polyadenylation and cleavage factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.