Factsheet for AT1G66500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G43620.1	Thale cress	nucleus	84.38	85.61
Bra004171.1-P	Field mustard	nucleus	30.29	56.25
VIT_18s0086g00630.t01	Wine grape	cytosol	8.17	48.57
CDX96143	Canola	nucleus	38.46	39.02
CDY36205	Canola	nucleus	36.06	35.89
VIT_18s0086g00620.t01	Wine grape	extracellular	10.1	30.66
AT4G04885.1	Thale cress	nucleus	24.52	12.62
GSMUA_Achr6P18930_001	Banana	nucleus	22.6	11.44
TraesCS7D01G290300.2	Wheat	nucleus	22.84	10.19
Os08t0187700-01	Rice	cytosol	23.56	10.09
TraesCS7A01G294500.5	Wheat	nucleus	22.6	10.07
HORVU7Hr1G069840.2	Barley	plastid	23.08	9.78
Zm00001d000023_P004	Maize	nucleus	22.36	9.65
OQU80002	Sorghum	nucleus	21.88	9.53
TraesCS7B01G181900.3	Wheat	nucleus	22.36	9.32
Zm00001d049442_P009	Maize	nucleus	21.39	9.2
AT2G36480.1	Thale cress	nucleus	19.71	8.52

Protein Annotations

MapMan:16.2.1.5.2	EntrezGene:842968	ProteinID:AAG51167.1	ProteinID:AEE34516.1	ArrayExpress:AT1G66500	EnsemblPlantsGene:AT1G66500
RefSeq:AT1G66500	TAIR:AT1G66500	RefSeq:AT1G66500-TAIR-G	EnsemblPlants:AT1G66500.1	TAIR:AT1G66500.1	EMBL:AY064970
Unigene:At.28299	EMBL:BT020523	GO:GO:0000993	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005849	GO:GO:0006139	GO:GO:0006369
GO:GO:0006378	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046872	InterPro:IPR013087	RefSeq:NP_176823.1	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00028	PANTHER:PTHR15921	UniProt:Q9C710	UniParc:UPI00000A62F6
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

PCFS1Polyadenylation and cleavage factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C710]

Coordinates

chr1:-:24811080..24812661

Molecular Weight (calculated)

46599.7 Da

IEP (calculated)

9.164

GRAVY (calculated)

-0.786

Length

416 amino acids

Sequence
(BLAST)

001: MASNGSFSAQ RNANARTTMK RRSDNRGYGG GIGGYQEETN RYAPPQKRFR SQAQQQFRSG HNPLYHHHGS NNNNVSRVSS QSYNNCGVDV IASNSSFALR
101: NNDSNTNNYQ KPFVAGYGNP NPQIVPLPLP YRKLDDNLSL DSLPDWVPNS RTLTPNYPVR SSNFVPNTPV FTNVQNPMNH SNMVSVVSQS MHQPIVLSKE
201: LTDLLSLLNN EKEKKTLEAS NSDSLPVGLS FDNPSSLNVR HESVIKSLYS DMPRQCSSCG LRFKCQEEHS KHMDWHVRKN RSVKTTTRLG QQPKKSRGWL
301: ASASLWLCAA TGGETVEVAS FGGEMQKKKG KDEEPKQLMV PADEDQKNCA LCVEPFEEFF SHEDDDWMYK DAVYLTKNGR IVHVKCMPEP RPAKDLREPS
401: RVMSVTVPSV AKAIAC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.