Factsheet for VIT_18s0086g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
mitochondrion 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04600.t01
VIT_10s0116g00720.t01
VIT_11s0065g00710.t01
VIT_18s0086g00620.t01
VIT_18s0086g00630.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66500.1	VIT_11s0065g00710.t01	AT1G17760.1	18479511
AT1G66500.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT1G66500.1	VIT_10s0116g00720.t01	AT4G04885.1	18479511
AT1G66500.1	VIT_18s0086g00620.t01	AT5G43620.1	18479511
AT1G66500.1	VIT_18s0086g00630.t01	AT5G43620.1	18479511
AT5G43620.1	VIT_11s0065g00710.t01	AT1G17760.1	18479511
AT5G43620.1	VIT_18s0086g00620.t01	AT1G66500.1	18479511
AT5G43620.1	VIT_18s0086g00630.t01	AT1G66500.1	18479511
AT5G43620.1	VIT_10s0116g00720.t01	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004171.1-P	Field mustard	nucleus	22.63	13.84
AT1G66500.1	Thale cress	nucleus	30.66	10.1
AT5G43620.1	Thale cress	nucleus	28.47	9.51
VIT_10s0116g00720.t01	Wine grape	nucleus	65.69	9.35
CDX96143	Canola	nucleus	23.36	7.8
CDY36205	Canola	nucleus	23.36	7.66
GSMUA_Achr6P18930_001	Banana	nucleus	43.07	7.18
Zm00001d000023_P004	Maize	nucleus	40.88	5.81
OQU80002	Sorghum	nucleus	40.15	5.76
Os08t0187700-01	Rice	cytosol	40.15	5.66
Zm00001d049442_P009	Maize	nucleus	38.69	5.48
TraesCS7D01G290300.2	Wheat	nucleus	36.5	5.36
TraesCS7A01G294500.5	Wheat	nucleus	36.5	5.36
TraesCS7B01G181900.3	Wheat	nucleus	36.5	5.01
HORVU7Hr1G069840.2	Barley	plastid	35.04	4.89
VIT_08s0007g03880.t01	Wine grape	nucleus	31.39	3.97
VIT_18s0086g00630.t01	Wine grape	cytosol	0.73	1.43

Protein Annotations

MapMan:16.2.1.5.2	ProteinID:CCB60830	ProteinID:CCB60830.1	UniProt:F6I1L3	EMBL:FN596511	GO:GO:0000993
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737
GO:GO:0005849	GO:GO:0006139	GO:GO:0006369	GO:GO:0006378	GO:GO:0006379	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	PANTHER:PTHR15921	SignalP:SignalP-noTM	UniParc:UPI0002109982
ArrayExpress:VIT_18s0086g00620	EnsemblPlantsGene:VIT_18s0086g00620	EnsemblPlants:VIT_18s0086g00620.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:17966984..17967443

Molecular Weight (calculated)

15847.9 Da

IEP (calculated)

4.593

GRAVY (calculated)

-0.574

Length

137 amino acids

Sequence
(BLAST)

001: MPVCGLVVQR HWALMQLLSF LCPLRQLWKR TDDEELVVPA DEDQNVCALS KEPFDDFYSD ETEEWMYKGA VYLNAPEESA TGMEWSQLGP IAYAKSRSES
101: NTVSLEDFGQ DKRGNMEEGS KRKRMLNKKL LRMLFTT

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.