Factsheet for GSMUA_Achr6P18930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P18930_001
GSMUA_Achr6P19820_001
GSMUA_Achr9P17150_001
GSMUA_Achr9P30440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66500.1	GSMUA_Achr9P17150_001	AT1G17760.1	18479511
AT1G66500.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT1G66500.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT1G66500.1	GSMUA_Achr6P18930_001	AT4G04885.1	18479511
AT1G66500.1	GSMUA_Achr6P18930_001	AT5G43620.1	18479511
AT4G04885.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT4G04885.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT4G04885.1	GSMUA_Achr6P18930_001	AT1G66500.1	18479511
AT4G04885.1	GSMUA_Achr6P18930_001	AT4G04885.1	18479511
AT4G04885.1	GSMUA_Achr6P18930_001	AT5G43620.1	18479511
AT5G43620.1	GSMUA_Achr9P17150_001	AT1G17760.1	18479511
AT5G43620.1	GSMUA_Achr6P18930_001	AT1G66500.1	18479511
AT5G43620.1	GSMUA_Achr6P18930_001	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0086g00630.t01	Wine grape	cytosol	5.47	64.29
VIT_18s0086g00620.t01	Wine grape	extracellular	7.18	43.07
Bra029526.1-P	Field mustard	nucleus, plastid	35.64	37.95
CDX94585	Canola	nucleus	34.55	37.37
Bra004171.1-P	Field mustard	nucleus	10.1	37.05
CDY16640	Canola	nucleus	34.79	36.95
KRH35574	Soybean	nucleus	18.0	36.72
AT4G04885.1	Thale cress	nucleus	35.52	36.14
KRG91241	Soybean	nucleus	39.66	34.79
VIT_10s0116g00720.t01	Wine grape	nucleus	40.63	34.68
KRH35569	Soybean	cytosol	38.81	34.6
PGSC0003DMT400075619	Potato	nucleus	39.9	33.61
Solyc12g094490.1.1	Tomato	nucleus	39.42	33.23
Os08t0187700-01	Rice	cytosol	38.56	32.65
TraesCS7A01G294500.5	Wheat	nucleus	36.86	32.48
TraesCS7D01G290300.2	Wheat	nucleus	36.74	32.4
Zm00001d049442_P009	Maize	nucleus	37.71	32.06
OQU80002	Sorghum	nucleus	36.98	31.83
Zm00001d000023_P004	Maize	nucleus	36.74	31.33
HORVU7Hr1G069840.2	Barley	plastid	36.98	30.96
TraesCS7B01G181900.3	Wheat	nucleus	36.62	30.16
GSMUA_Achr10P...	Banana	nucleus	26.89	24.69
CDX96143	Canola	nucleus	12.17	24.39
AT5G43620.1	Thale cress	nucleus	11.8	23.66
CDY36205	Canola	nucleus	11.68	22.97
AT1G66500.1	Thale cress	nucleus	11.44	22.6
GSMUA_Achr11P...	Banana	nucleus	25.91	20.76
GSMUA_Achr3P22800_001	Banana	nucleus	27.62	19.4

Protein Annotations

Gene3D:1.25.40.90	MapMan:16.2.1.5.2	InterPro:CID_dom	ncoils:Coil	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr6G18930_001	EnsemblPlants:GSMUA_Achr6P18930_001	EnsemblPlants:GSMUA_Achr6T18930_001	InterPro:IPR006569
InterPro:IPR008942	InterPro:IPR013087	UniProt:M0T891	PFAM:PF04818	ScanProsite:PS00028	PFscan:PS51391
PANTHER:PTHR15921	InterPro:RNA_pol_II-bd	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI0002962F2D	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G18930_001]

Coordinates

chr6:+:13126640..13133467

Molecular Weight (calculated)

91679.9 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.516

Length

822 amino acids

Sequence
(BLAST)

001: MEERFPSSRE NPRAAGPTSQ RPVAPSITER FGAMLRDREE KLREATGEET VLTADDIVRC YEDVLSELTF NSKPVITDLT IIAGQHIRYA EEVADAICTR
101: ILELKLEAVL HYSHFTTCLK GFYALWICVQ VAVDQKLPSL YLIDSIVKNI GHHYVRIFAT RLPKVFCEAY NQVHPTQYSS MRHLFGTWSQ VFPSKILKKI
201: EDELQFSPSE SKRSSGITST RQSKPPSPHH SRGIHVNPKY LEARHQFEQS AVGIPHTSVS SSLHVYEQKP SKQYSESDFD LPELLPQDLG TSGAGPPQTA
301: MVHVDPNSRA DRSRPSNEDP YHVEVSMQHN HKYGYGKQHP RDLIDAYGNP RGRVSSYEKF PKVQRLDVNG IASEAATRKW KNSDEEEYVW ESMSPTLADQ
401: SRRNSLPPFG PSSGSISNRT GISISNPAML ETDFQRHSWP VQTQVRAADD SSFIVDDRIT CHWGIDRSII FLYLDGTTSQ TGSPPHHQKL NRTRDSGKFS
501: CLFPQSTRQS LSPRSRISMP MRTPETYGSI LPPATALVSS YLIGQPVNHL QTLGTGVSVV SVLPCSSFAT PSVTVHRTID TSLHLHGSLL PPLPPGPRPA
601: SSQMGPTPQT MSSSISSSPA SAYSGLIGSL MEQGLISLKP SVQSQETLGI EFDIELLKVR HESAINALYD DLPRKCATCG LRFKGQEEHS SHMDWHVTKN
701: RISKNRKQKP SRKWYVSAKE WLSGAEILGN DVVPGFLPTE SVSEKKEDIE VAVPADENQN VCALCGELFE DFYSDETEEW MYKGAVYLNA PDGYIEGLDR
801: SQLGPIVHAK CRSESNECSV QA

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.