CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91241
KRH11760
KRH35569
KRH35574
KRH36762

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04885.1	KRH11760	AT1G30460.1	18479511
AT4G04885.1	KRH36762	AT1G30460.1	18479511
AT4G04885.1	KRG91241	AT4G04885.1	18479511
AT4G04885.1	KRH35569	AT4G04885.1	18479511
AT4G04885.1	KRH35574	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35569	Soybean	cytosol	88.79	90.24
KRH35574	Soybean	nucleus	20.49	47.64
VIT_10s0116g00720.t01	Wine grape	nucleus	45.14	43.93
Bra029526.1-P	Field mustard	nucleus, plastid	35.86	43.52
AT4G04885.1	Thale cress	nucleus	37.14	43.07
CDX94585	Canola	nucleus	34.9	43.03
CDY16640	Canola	nucleus	35.22	42.64
PGSC0003DMT400075619	Potato	nucleus	44.29	42.52
Solyc12g094490.1.1	Tomato	nucleus	43.54	41.85
GSMUA_Achr6P18930_001	Banana	nucleus	34.79	39.66
TraesCS7A01G294500.5	Wheat	nucleus	32.12	32.26
TraesCS7D01G290300.2	Wheat	nucleus	32.02	32.19
Os08t0187700-01	Rice	cytosol	32.44	31.31
OQU80002	Sorghum	nucleus	31.48	30.89
Zm00001d049442_P009	Maize	nucleus	31.7	30.71
HORVU7Hr1G069840.2	Barley	plastid	31.91	30.45
Zm00001d000023_P004	Maize	nucleus	31.27	30.39
TraesCS7B01G181900.3	Wheat	nucleus	31.8	29.86
KRH32653	Soybean	nucleus	24.01	23.08
KRG96135	Soybean	nucleus	23.69	22.27
KRH67849	Soybean	nucleus	23.59	21.37
KRG96139	Soybean	nucleus	23.37	21.26

Protein Annotations

Gene3D:1.25.40.90	EntrezGene:100794796	MapMan:16.2.1.5.2	EMBL:ACUP02012669	InterPro:CID_dom	InterPro:ENTH_VHS
EnsemblPlantsGene:GLYMA_20G142500	GO:GO:0000993	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0005849	GO:GO:0006139	GO:GO:0006369	GO:GO:0006378
GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR006569
InterPro:IPR008942	InterPro:IPR013087	UniProt:K7N3F0	EnsemblPlants:KRG91241	ProteinID:KRG91241	ProteinID:KRG91241.1
PFAM:PF04818	ScanProsite:PS00028	PFscan:PS51391	PANTHER:PTHR15921	InterPro:RNA_pol_II-bd	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI00023DBD4E	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:38101385..38107264

Molecular Weight (calculated)

103830.0 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.599

Length

937 amino acids

Sequence
(BLAST)

001: MFSQNVILPP ENPRPTAFAS KPMSNEIAKP LPSILVGRFK ALLKQRDDEL RVAAGDPVPP ASTDEIVQIY ELLLSELTCN LKPIITDLTI IAEQQREHAK
101: GIADAICARI LEVPVDQKLP SLYLLDSIVK NFGQEYIRYF SLRLPEVFCE AYRQIQPTLH SAMRHLFGTW SKVFPPSVLR KIETELQFSQ AVNTQSSTLN
201: PVRASESSRP SHAIHVNPKY LRQLERSTVD SASKTHQFLS SSSSLGISSS SPSRIGVDRP LSASMDEYAV DNSAVRLIER NSPHPAVDYG VAKALGRDVD
301: LTEWQQKQYP GDGRNRFPTS VTYSLSNGHQ RQSPRALIDA YGSDKSQETS SSKPLLVERL DRNGIDKVLS TSWQNTEEEE FDWENMSPTL TDHSRNNSLL
401: PSTFGFSRER PGVAANATLS EQDTRKGWSS GSQLPPVDDS SAIAEDAFAS STFRRTPPGQ VPGSQNQINH SLGSSQPHDA WKISHHPSNI FSNRGRARNL
501: MIPPMDNIRN TDNNPYWVRP SMSRMEARPS VLPAPFEMRP SVNVNVTRPP IINPINPLQK HVRSQFNAIN TSNPIANHVN KSSFMPKQSF DSVENKDASI
601: SKIHQLPNQL PGVISSNQQN HGQAPQLQFF PSQDPSTSQF CHGSSLQGHG ASISTAMSNP LPVIPFPLPF QSIANNPLHL QGGAHPSLPP GRPPAPSQMI
701: PHPNVGAYMS SQQPTVGYTN LISSLMSQGV ISLANQLPAQ DSVGTEFNPD ILKVRHESAV NALYGDLPRQ CTTCGLRFKC QEEHSSHMDW HVTKNRMSKT
801: RKQKPSRKWF VSDRMWLSGA EALGTESAPG FLPTETIEER KDDEELAVPA EEDQNTCALC GEPFDEFYSD EMEEWMYRGA VYLNAPTGTT AGMDRTQLGP
901: IIHAKCRSES NMATSEDLGP DEKGADEEGS QRKRMRS

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.