CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91241
KRH11760
KRH35569
KRH35574
KRH36762

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04885.1	KRH11760	AT1G30460.1	18479511
AT4G04885.1	KRH36762	AT1G30460.1	18479511
AT4G04885.1	KRG91241	AT4G04885.1	18479511
AT4G04885.1	KRH35569	AT4G04885.1	18479511
AT4G04885.1	KRH35574	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91241	Soybean	nucleus	90.24	88.79
KRH35574	Soybean	nucleus	21.04	48.14
CDY16640	Canola	nucleus	36.98	44.06
Bra029526.1-P	Field mustard	nucleus, plastid	36.55	43.65
CDX94585	Canola	nucleus	35.57	43.16
VIT_10s0116g00720.t01	Wine grape	nucleus	44.9	42.99
AT4G04885.1	Thale cress	nucleus	37.53	42.82
PGSC0003DMT400075619	Potato	nucleus	43.06	40.68
Solyc12g094490.1.1	Tomato	nucleus	42.41	40.1
GSMUA_Achr6P18930_001	Banana	nucleus	34.6	38.81
TraesCS7A01G294500.5	Wheat	nucleus	32.65	32.26
TraesCS7D01G290300.2	Wheat	nucleus	32.54	32.19
OQU80002	Sorghum	nucleus	32.43	31.31
Os08t0187700-01	Rice	cytosol	32.75	31.1
Zm00001d000023_P004	Maize	nucleus	32.43	31.02
Zm00001d049442_P009	Maize	nucleus	32.21	30.71
HORVU7Hr1G069840.2	Barley	plastid	32.54	30.55
TraesCS7B01G181900.3	Wheat	nucleus	32.32	29.86
KRH32653	Soybean	nucleus	24.4	23.08
KRG96135	Soybean	nucleus	24.3	22.47
KRH67849	Soybean	nucleus	24.62	21.95
KRG96139	Soybean	nucleus	24.3	21.75

Protein Annotations

Gene3D:1.25.40.90	EntrezGene:100787354	MapMan:16.2.1.5.2	EMBL:ACUP02006692	InterPro:CID_dom	InterPro:ENTH_VHS
EnsemblPlantsGene:GLYMA_10G251100	GO:GO:0000993	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0005849	GO:GO:0006139	GO:GO:0006369	GO:GO:0006378
GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR006569
InterPro:IPR008942	InterPro:IPR013087	UniProt:K7LLB6	EnsemblPlants:KRH35569	ProteinID:KRH35569	ProteinID:KRH35569.1
PFAM:PF04818	ScanProsite:PS00028	PFscan:PS51391	PANTHER:PTHR15921	InterPro:RNA_pol_II-bd	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI0002949737	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:47920678..47927383

Molecular Weight (calculated)

102039.0 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.555

Length

922 amino acids

Sequence
(BLAST)

001: MFSQNMILPP ENPRPAGFAS KPMGNEIAKP PPSILVGRFK ALLKQRDDEL RATSVPVPPP STDEIVQIYE LLLSELTCNL KPIITDLTII AEQQREHAKG
101: IADAICARIL EVPVDQKLPS LYLLDSIVKN FGQEYIRYFS LRLPEVFCEA YRQVQPSLHS AMRHLFGTWS KVFPPSVLHK IEAELQFSQA VNTQSSTPNP
201: VRASESSRPS HGIHVNPKYL RQLERSTVDS ASKTHQFLSS SSRLGISSSS PLRIGVDRPL SASIDEYAVD NPGVDYGVAK ALGRDVDLTE WQRKLYSGDG
301: RNRFPTSFTY SLSNGHQRQS SRALIDAYGS DKSQETSSSK SLLVERLDRN GIDKVLSTSW QNTEEEEFDW ENMSPTLIDH SRNNSLLPST FGFSRERPGV
401: AANATLSEQD TRKGWSSGSQ LPPVDDSSAI AEDAFASSTF CRAPPGQVPG SQNQINHSLG SSQPHDAWKI SHHPSNIFSN RGRARNLMIP PIDNIRNTDN
501: NPYWVRPAVS RMEAHPSVLP APFEMRPSVN VNVTRPPIIN PLQKHVRSQF DAMNTSNPIA NHVVNKSSFM PEQSFDSVEN KDASILKIHQ LPNQLSGVIS
601: SNQQNHGQAP QLQFFPSQDP STSQFSHGSS SQGHGVSIST AMSNPLPVLP FPLPFQSISN NPLHLQGGAH PPLPPGRPPA PSQMIPHPNA GAFMPSQQPT
701: VGYTNLISSL MSQGVISLAN QLPAQDSVGT EFNPDILKIR HESAVNALYG DLPRQCTTCA LRFKCQEEHS SHMDWHVTKN RMSKSRKQKP SRKWFVSDRM
801: WLSGAEALGT ESAPGFLPTE TIEEMKDHEE LAVPAEEDQN TCALCGEPFD EFYSDEMEEW MYRGAVYLNA PLGITAGMDR SQLGPIIHAK CRSESNMATS
901: EDLGLDEKGA DEEGSQRKRM RS

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.