Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400054373 | |
| PGSC0003DMT400075619 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G04885.1 | PGSC0003DMT400054373 | AT1G30460.1 | 18479511 |
| AT4G04885.1 | PGSC0003DMT400075619 | AT4G04885.1 | 18479511 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g094490.1.1 | Tomato | nucleus | 96.11 | 96.21 |
| CDX94585 | Canola | nucleus | 35.04 | 45.0 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 35.45 | 44.82 |
| AT4G04885.1 | Thale cress | nucleus | 36.99 | 44.68 |
| KRG91241 | Soybean | nucleus | 42.52 | 44.29 |
| CDY16640 | Canola | nucleus | 35.04 | 44.19 |
| KRH35569 | Soybean | cytosol | 40.68 | 43.06 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 40.27 | 40.81 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 33.61 | 39.9 |
| KRH35574 | Soybean | nucleus | 15.68 | 37.97 |
| TraesCS7A01G294500.5 | Wheat | nucleus | 32.17 | 33.65 |
| TraesCS7D01G290300.2 | Wheat | nucleus | 31.97 | 33.48 |
| HORVU7Hr1G069840.2 | Barley | plastid | 32.48 | 32.28 |
| Zm00001d049442_P009 | Maize | nucleus | 31.86 | 32.16 |
| OQU80002 | Sorghum | nucleus | 31.25 | 31.94 |
| Os08t0187700-01 | Rice | cytosol | 31.66 | 31.82 |
| Zm00001d000023_P004 | Maize | nucleus | 31.15 | 31.54 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 32.07 | 31.36 |
| PGSC0003DMT400007032 | Potato | nucleus | 25.0 | 23.33 |
Protein Annotations
| Gene3D:1.25.40.90 | EntrezGene:102582930 | MapMan:16.2.1.5.2 | InterPro:CID_dom | InterPro:ENTH_VHS | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0006397 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009911 | GO:GO:0009987 |
| InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | UniProt:M1CVI1 | PFAM:PF04818 | EnsemblPlantsGene:PGSC0003DMG400029413 |
| PGSC:PGSC0003DMG400029413 | EnsemblPlants:PGSC0003DMT400075619 | ScanProsite:PS00028 | PFscan:PS51391 | PANTHER:PTHR15921 | InterPro:RNA_pol_II-bd |
| SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI00029581C1 | RefSeq:XP_006342553.1 | InterPro:Znf_C2H2_type | SEG:seg |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029413]
Coordinates
chr12:+:57308126..57316671
Molecular Weight (calculated)
107508.0 Da
IEP (calculated)
7.244
GRAVY (calculated)
-0.575
Length
976 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAGGYANS KLIQNDAAVA PPKPLSSSVI ERYKAALKER EMEIRASMPD GDDDVIVLPP SRNEIVRLYE LLLSELAFNS KPIITDLTII AGEQREHGEG
101: IAHAICNRIL EVPVEQKLPA LYLLDSVVKN IGKDYIKHFS AHLPEVFCEA YRQVHPSMHP AMRHLFGTWS TVFPAPVLQK IETRLQFSQP GVQQSSGLTS
201: SRASESPRPT HGIHVNPKYL EARRQLGHST IDSVRAENST GHISSDLEAK QVLSTSSKNA RSSSPYTVGP PRSLSPTLNE FALDNPAIGL RERASPSHTA
301: LDYGFSRVRG RDVERSEWQR ILPDGANQQP DIPSKYRMNK GIDLQGPRAL IDAYGIDERE KVSNLRQQKI GNATINGLGN RLAVKTWQNT EEEEFNWEDM
401: SPTLADQSPF NDLSASVRHP QSIRMRPGVD SQHAVPLVTD PRRSWANRGQ YSLVHDSSLD DVHSSGRGAR NKITGYCDET SLISGSHYLQ KLPENVPQLP
501: LRHLKGEGSG ISSATGELKH PLIGNLAADG HTWRPPYVPP RMNPTFDSSV QDIRVVTGRG PGVPWPPQNV HTPQSLTSKP VVLPHNHVRS PFEVNNASNS
601: VVNHTLDRPV LPEQHIDNLK SSSHIKFPQF PSQHPTSFSA SHQNPEQMAS AEPQLLLSQR IHQTMPPSAS LPTSNHLLPP IYRYPLQGPG SSIGTHFPRP
701: VSGPQVSMPL VNVPNTSSQF SSGALPPFPR GPLPMPSKFM PASQNPGQVT PNPPAAGFSS LINSLMAQGL ISLTNQAPAQ DPVGLDFNPD LLKVRRDSAV
801: TALYADLPRQ CTTCGLRFKC QEAHSSHMDW HVTKNRVSKN RKQKSSRKWF VSVNMWLSGT EALGSDAVPG FLPTEQVVET KDDEELAVPA DDEQNACALC
901: GEPFDDFYSD ETEEWMYRGA VYMNAPSGST VGMERSQLGP IIHAKCRSES SATPHEDSRN VDEGQEDGSQ RKRMRS
101: IAHAICNRIL EVPVEQKLPA LYLLDSVVKN IGKDYIKHFS AHLPEVFCEA YRQVHPSMHP AMRHLFGTWS TVFPAPVLQK IETRLQFSQP GVQQSSGLTS
201: SRASESPRPT HGIHVNPKYL EARRQLGHST IDSVRAENST GHISSDLEAK QVLSTSSKNA RSSSPYTVGP PRSLSPTLNE FALDNPAIGL RERASPSHTA
301: LDYGFSRVRG RDVERSEWQR ILPDGANQQP DIPSKYRMNK GIDLQGPRAL IDAYGIDERE KVSNLRQQKI GNATINGLGN RLAVKTWQNT EEEEFNWEDM
401: SPTLADQSPF NDLSASVRHP QSIRMRPGVD SQHAVPLVTD PRRSWANRGQ YSLVHDSSLD DVHSSGRGAR NKITGYCDET SLISGSHYLQ KLPENVPQLP
501: LRHLKGEGSG ISSATGELKH PLIGNLAADG HTWRPPYVPP RMNPTFDSSV QDIRVVTGRG PGVPWPPQNV HTPQSLTSKP VVLPHNHVRS PFEVNNASNS
601: VVNHTLDRPV LPEQHIDNLK SSSHIKFPQF PSQHPTSFSA SHQNPEQMAS AEPQLLLSQR IHQTMPPSAS LPTSNHLLPP IYRYPLQGPG SSIGTHFPRP
701: VSGPQVSMPL VNVPNTSSQF SSGALPPFPR GPLPMPSKFM PASQNPGQVT PNPPAAGFSS LINSLMAQGL ISLTNQAPAQ DPVGLDFNPD LLKVRRDSAV
801: TALYADLPRQ CTTCGLRFKC QEAHSSHMDW HVTKNRVSKN RKQKSSRKWF VSVNMWLSGT EALGSDAVPG FLPTEQVVET KDDEELAVPA DDEQNACALC
901: GEPFDDFYSD ETEEWMYRGA VYMNAPSGST VGMERSQLGP IIHAKCRSES SATPHEDSRN VDEGQEDGSQ RKRMRS
001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
Arabidopsis Description
PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.