Factsheet for Bra029526.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004171.1-P
Bra010767.1-P
Bra014881.1-P
Bra029526.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04885.1	Bra010767.1-P	AT1G30460.1	18479511
AT4G04885.1	Bra014881.1-P	AT1G30460.1	18479511
AT4G04885.1	Bra004171.1-P	AT1G66500.1	18479511
AT4G04885.1	Bra029526.1-P	AT4G04885.1	18479511
AT4G04885.1	Bra004171.1-P	AT5G43620.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16640	Canola	nucleus	97.02	96.77
CDX94585	Canola	nucleus	94.17	95.66
AT4G04885.1	Thale cress	nucleus	72.93	69.68
Bra004171.1-P	Field mustard	nucleus	11.01	37.95
KRH35574	Soybean	nucleus	19.69	37.72
KRH35569	Soybean	cytosol	43.65	36.55
VIT_10s0116g00720.t01	Wine grape	nucleus	44.82	35.93
KRG91241	Soybean	nucleus	43.52	35.86
GSMUA_Achr6P18930_001	Banana	nucleus	37.95	35.64
PGSC0003DMT400075619	Potato	nucleus	44.82	35.45
Solyc12g094490.1.1	Tomato	nucleus	44.17	34.97
TraesCS7D01G290300.2	Wheat	nucleus	36.01	29.83
TraesCS7A01G294500.5	Wheat	nucleus	36.01	29.8
Os08t0187700-01	Rice	cytosol	36.79	29.25
HORVU7Hr1G069840.2	Barley	plastid	36.66	28.82
TraesCS7B01G181900.3	Wheat	nucleus	36.01	27.86
OQU80002	Sorghum	nucleus	33.81	27.33
Zm00001d049442_P009	Maize	nucleus	33.94	27.09
Zm00001d000023_P004	Maize	nucleus	33.16	26.56
Bra005265.1-P	Field mustard	nucleus, plastid	25.39	19.62

Protein Annotations

Gene3D:1.25.40.90	MapMan:16.2.1.5.2	EnsemblPlantsGene:Bra029526	EnsemblPlants:Bra029526.1	EnsemblPlants:Bra029526.1-P	InterPro:CID_dom
InterPro:ENTH_VHS	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006378
GO:GO:0006397	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009908
GO:GO:0009911	GO:GO:0009987	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR013087	UniProt:M4EL59
PFAM:PF04818	ScanProsite:PS00028	PFscan:PS51391	PANTHER:PTHR15921	InterPro:RNA_pol_II-bd	SMART:SM00582
SUPFAM:SSF48464	UniParc:UPI0002542687	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

AT4G04885 (E=5e-188) PCFS4 | PCFS4 (PCF11P-SIMILAR PROTEIN 4); zinc ion binding

Coordinates

chrA09:-:17363614..17366784

Molecular Weight (calculated)

84558.4 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.593

Length

772 amino acids

Sequence
(BLAST)

001: MQSEKILNPS LLLSTTTGRK SMSVVKPPPP PSILDRFKAL LNQREDEFGG EDPSSEEVVQ LYEVVLGELT FNSKPIITDL TIIADEQREH GEGIANAICT
101: RILEAPVEQK LPSLYLLDSI VKNIGRDYAR YFSSRLPEVF CLAYRQAHPS LHPSMRHLFG TWSGVFPSPV LRKIEMQLKL TSATNSQSSL GASEPAQPTR
201: GIHVNPKYLR RLEPSAAESN LRGISSSAKV YSQNSVGGYD DFEDQLDSPS SLAGPRSSTA GTLTLASSAI GDGFPRRFSD GVNSSNQAYN YGMGRATGRD
301: DEHMDWRRKD NFGQGNDHER PRALIDAYGV DTSKHTSISR PIRNVNGIHS KMVTPWQNTE EEEFDWEDMS PTLERSRAGE FLRSSVPALG SVRPRPRLGN
401: IHDFQLDSDI KNGMNSRFGR GPAMISRVGP SGADVLPDGT WPHLGVRGSN SLPVPSAQHH LANPGNAMLN HLNGKPLYRP ENQVSHMTQQ NQVLGNYLPS
501: SSAMAPRAMQ SLLPHGHGYP PLGSTIRPSL SVHGGEAMHP HSSGVSISQN PSLGASNQPP GGAFSGLIGS LMAQGLISLN NQPTGQGASV MEFDADMLKI
601: RNESAITALY GDLPRQCTTC GLRFKCQEEH SKHMDWHVTK NRMSKNHKQK PSRKWFVSGS MWLSGAEALG AEAVPGFLPV EPTTEKKDDE EMAVPADEDQ
701: TSCALCGEPF EDFYSDETEE WMYKGAVYMN APDGSTTDVD KSLLGPIVHA KCRPETNGGD MEEGSQRKRM RS

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.