Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os06t0677700-00 | |
| Os08t0187700-01 | |
| Os12t0571900-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G290300.2 | Wheat | nucleus | 69.0 | 71.89 |
| TraesCS7A01G294500.5 | Wheat | nucleus | 68.9 | 71.7 |
| OQU80002 | Sorghum | nucleus | 67.66 | 68.8 |
| Zm00001d049442_P009 | Maize | nucleus | 68.18 | 68.46 |
| HORVU7Hr1G069840.2 | Barley | plastid | 68.69 | 67.92 |
| Zm00001d000023_P004 | Maize | nucleus | 67.35 | 67.84 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 69.0 | 67.13 |
| VIT_18s0086g00630.t01 | Wine grape | cytosol | 4.43 | 61.43 |
| VIT_18s0086g00620.t01 | Wine grape | extracellular | 5.66 | 40.15 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 32.65 | 38.56 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 29.25 | 36.79 |
| CDX94585 | Canola | nucleus | 28.53 | 36.45 |
| CDY16640 | Canola | nucleus | 28.94 | 36.3 |
| AT4G04885.1 | Thale cress | nucleus | 29.35 | 35.27 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 34.71 | 34.99 |
| Bra004171.1-P | Field mustard | nucleus | 7.93 | 34.38 |
| KRH35569 | Soybean | cytosol | 31.1 | 32.75 |
| KRG91241 | Soybean | nucleus | 31.31 | 32.44 |
| KRH35574 | Soybean | nucleus | 13.39 | 32.26 |
| PGSC0003DMT400075619 | Potato | nucleus | 31.82 | 31.66 |
| Solyc12g094490.1.1 | Tomato | nucleus | 31.51 | 31.38 |
| CDX96143 | Canola | nucleus | 10.5 | 24.88 |
| CDY36205 | Canola | nucleus | 10.61 | 24.64 |
| AT5G43620.1 | Thale cress | nucleus | 10.4 | 24.63 |
| AT1G66500.1 | Thale cress | nucleus | 10.09 | 23.56 |
| Os09t0566100-01 | Rice | nucleus | 23.89 | 21.7 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:16.2.1.5.2 | EntrezGene:4344833 | EMBL:AK099689 | ProteinID:BAD03324.1 | ProteinID:BAF23065.1 |
| ProteinID:BAT04140.1 | InterPro:CID_dom | InterPro:ENTH_VHS | GO:GO:0000993 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005849 | GO:GO:0006139 |
| GO:GO:0006369 | GO:GO:0006378 | GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | EnsemblPlantsGene:Os08g0187700 | EnsemblPlants:Os08t0187700-01 |
| PFAM:PF04818 | ScanProsite:PS00028 | PFscan:PS51391 | PANTHER:PTHR15921 | UniProt:Q6ZAQ9 | InterPro:RNA_pol_II-bd |
| SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI00002260AB | RefSeq:XP_015650018.1 | InterPro:Znf_C2H2_type | SEG:seg |
Description
ENTH/VHS domain containing protein. (Os08t0187700-01)
Coordinates
chr8:-:5119189..5128123
Molecular Weight (calculated)
106756.0 Da
IEP (calculated)
6.723
GRAVY (calculated)
-0.606
Length
971 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAVAGA GGVGHVVERF RARLREEQEE EEGGGGEVAA AAVVRVYVEV LSELTFNCKP IITELTIIAG QHAALAARGI ADAICARIAE VSADQKLPSL
101: YLLDSIVKNI GREYVGHFAA RLQKVFCDAY RKVHRNQHAA MRHLFGTWSQ VFPSSVLRGI EDELQFSPLE NKRSATATDI RQSESISPRL SHAIHVNPKY
201: LEAQQQFKQS TSVHQPITRG NRQMNDVEED QINGLTSKSS RGWPATNSKL QKSTMLYADD LDQQEAFCSH TGLIRPSSPH LLSKHPSILN TEGPLANSRR
301: TMSRSPPLDV LPRNASPKRA LERPPLSHSV LGPDPRRLPD RNGWFERKWA FEDGAQRPSM SILDEEYRKQ SARELIDAYG NSQGKDVDER LPKMQRLDSN
401: GMAGRPSAQK WLTSEEEEYT WEDMSPTLTD RNRTSVPSLP PLGTLRAGFL GPNSGLLESD IVRHSWPGQA PRPAIDGPPL NLEDRIPTNG PVDRTNNRRY
501: PGNFGVQNGA FLDYQSSEHT LDPGRTTMPV PPWQQTIGQP LRVQAPQPAS ILNRMPLPTD SEVPVKRLAT GGTYDALNVD IPLLEKQRSS PAHAPMEWPL
601: NTQSLTIQPI PPDTKHPRGA SDGLDSRPFI SQGSSSSVFV PQHHALDRRT MNADDLAQPS YQHPDLLSLS QQNQGTVLGN QGQPHHPPQF HPHPHSHLQE
701: TIRSFAPSMS VAPPQNIFHG QGGSAAALLP SSFPVPPAVP PYGLQSMPGF PLPSLPSGPP PPSQIGPSSS QVGGPPLVSG LLSNLMQHGI ISLQPPSQPQ
801: DSVGVDFNVD LKVRNESVIN ALYQDLPRQC KTCGLRFKCQ EEHRAHMDWH VTKNRNSKNR KQTSRKYFVT VGEWLRAAET VGNDGVPSFE PAEPVADAKE
901: EKELAVPADE DQTTCALCQE PFEDFYSDET EEWMYKGAVY MNAPDGNIGG LERSQLGPIV HAKCLSGPNN T
101: YLLDSIVKNI GREYVGHFAA RLQKVFCDAY RKVHRNQHAA MRHLFGTWSQ VFPSSVLRGI EDELQFSPLE NKRSATATDI RQSESISPRL SHAIHVNPKY
201: LEAQQQFKQS TSVHQPITRG NRQMNDVEED QINGLTSKSS RGWPATNSKL QKSTMLYADD LDQQEAFCSH TGLIRPSSPH LLSKHPSILN TEGPLANSRR
301: TMSRSPPLDV LPRNASPKRA LERPPLSHSV LGPDPRRLPD RNGWFERKWA FEDGAQRPSM SILDEEYRKQ SARELIDAYG NSQGKDVDER LPKMQRLDSN
401: GMAGRPSAQK WLTSEEEEYT WEDMSPTLTD RNRTSVPSLP PLGTLRAGFL GPNSGLLESD IVRHSWPGQA PRPAIDGPPL NLEDRIPTNG PVDRTNNRRY
501: PGNFGVQNGA FLDYQSSEHT LDPGRTTMPV PPWQQTIGQP LRVQAPQPAS ILNRMPLPTD SEVPVKRLAT GGTYDALNVD IPLLEKQRSS PAHAPMEWPL
601: NTQSLTIQPI PPDTKHPRGA SDGLDSRPFI SQGSSSSVFV PQHHALDRRT MNADDLAQPS YQHPDLLSLS QQNQGTVLGN QGQPHHPPQF HPHPHSHLQE
701: TIRSFAPSMS VAPPQNIFHG QGGSAAALLP SSFPVPPAVP PYGLQSMPGF PLPSLPSGPP PPSQIGPSSS QVGGPPLVSG LLSNLMQHGI ISLQPPSQPQ
801: DSVGVDFNVD LKVRNESVIN ALYQDLPRQC KTCGLRFKCQ EEHRAHMDWH VTKNRNSKNR KQTSRKYFVT VGEWLRAAET VGNDGVPSFE PAEPVADAKE
901: EKELAVPADE DQTTCALCQE PFEDFYSDET EEWMYKGAVY MNAPDGNIGG LERSQLGPIV HAKCLSGPNN T
001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
Arabidopsis Description
PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.