Factsheet for Os06t0677700-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0313300-01
Os03t0754900-02
Os04t0252200-01
Os06t0677700-00
Os07t0688500-00
Os08t0187700-01
Os09t0397900-01
Os09t0569400-01
Os12t0571900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	Os12t0571900-01	AT1G17760.1	18479511
AT1G30460.1	Os06t0677700-00	AT1G30460.1	18479511
AT1G30460.1	Os08t0187700-01	AT1G66500.1	18479511
AT1G30460.1	Os09t0397900-01	AT2G01730.1	16897494
AT1G30460.1	Os03t0313300-01	AT3G06560.1	16897494
AT1G30460.1	Os07t0688500-00	AT3G06560.1	16897494
AT1G30460.1	Os03t0313300-01	AT3G06560.1	18479511
AT1G30460.1	Os07t0688500-00	AT3G06560.1	18479511
AT1G30460.1	Os08t0187700-01	AT4G04885.1	18479511
AT1G30460.1	Os09t0569400-01	AT5G23880.1	16897494
AT1G30460.1	Os09t0569400-01	AT5G23880.1	18479511
AT1G30460.1	Os04t0252200-01	AT5G51660.1	16897494
AT1G30460.1	Os04t0252200-01	AT5G51660.1	18479511
AT1G30460.1	Os03t0754900-02	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G450100.1	Wheat	nucleus	83.53	88.15
TraesCS7A01G461800.1	Wheat	nucleus	83.53	88.15
EER88812	Sorghum	cytosol, nucleus, peroxisome	82.8	88.06
HORVU7Hr1G106340.5	Barley	cytosol	82.94	87.67
TraesCS7B01G363200.2	Wheat	nucleus	83.09	87.29
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	80.9	86.72
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	77.99	82.69
Zm00001d036595_P001	Maize	nucleus	29.15	79.68
Zm00001d014379_P001	Maize	nucleus	28.43	79.27
GSMUA_Achr6P19820_001	Banana	nucleus	62.24	61.71
GSMUA_Achr9P30440_001	Banana	nucleus	57.29	59.82
VIT_10s0003g04600.t01	Wine grape	nucleus	58.16	59.29
KRH11760	Soybean	nucleus	59.04	58.61
KRH36762	Soybean	nucleus	58.02	58.44
CDX98205	Canola	nucleus	45.92	57.9
AT1G30460.1	Thale cress	nucleus	52.48	57.05
Solyc02g070240.2.1	Tomato	nucleus	54.66	55.89
Bra014881.1-P	Field mustard	nucleus	46.79	55.34
Bra010767.1-P	Field mustard	nucleus	50.44	54.92
CDX77591	Canola	nucleus	46.65	53.78
Solyc02g021760.2.1	Tomato	nucleus	53.35	53.12
CDY12057	Canola	cytosol, nucleus, peroxisome	49.85	52.13
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	17.06	43.98

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	UniProt:A0A0P0X0B1	ProteinID:BAS99118.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0004521	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006378	GO:GO:0006396	GO:GO:0006950	GO:GO:0006979	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009719	GO:GO:0009987	GO:GO:0016787
GO:GO:0031124	GO:GO:0034052	GO:GO:0043068	GO:GO:0046872	GO:GO:1900363	GO:GO:2000031
InterPro:IPR000571	InterPro:IPR007275	EnsemblPlantsGene:Os06g0677700	EnsemblPlants:Os06t0677700-00	PFAM:PF04146	PFscan:PS50103
PFscan:PS50882	PANTHER:PTHR12357	PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI000393BB8B
InterPro:YTH_domain	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45YT521-B-like protein family protein. (Os06t0677700-00)

Coordinates

chr6:+:28151297..28156417

Molecular Weight (calculated)

74767.5 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.961

Length

686 amino acids

Sequence
(BLAST)

001: MSPKSQLPTG AKNPKNSLSP TMDDGDLSFD FEGGLDQPPA GGGGGPAPHS SDPGGVGGGG GGGGPGDGGG HGRGRGRGSY RQTVCRHWLR GLCMKGEACG
101: FLHQFDKARM PVCRFFRDFG ECREPDCAYK HSYDDVKECN MYKMGFCPNG PNCRYKHVKL PGPPPPVEEV LQKILQIRSF NKFNQHRHNN YNQQGERPQH
201: PQGSGLPNQN SIDNTTTTTA QPAVGQQAQT TNQQPPQQQQ QQQQQQQQQQ KPNTNDQVQS VPNGSSNQAT RIATPLPQGP SRYFIVKSCN RENLEISVQQ
301: GIWATQRSNE AKLNEAFESI ENVILIFSIN RTRNFQGCAK MTSRIGGYIG GGNWKSAHGT AHYGRNFSIQ WLKLCELSFQ KTHHLRNPYN DNLPVKISRD
401: CQELEPFIGE QLASLLYLEP DSELTAILIA AEAKKEEEKA KGVSADEAAD NQDIVLFDDN EEEEEEESEE EEEGNGQESQ GRGRGRGMMW PPQMPMLRGV
501: GPMMGGRGFP PNMIGDGFGF GGGFGMPDPF GVPRGFPPFG PRFPGDFARG GPMPGMVFPG RPPQPGGMFP MGLEMMMGPG RGPLMGGLGM GGPGRPNRPV
601: GMAPFMPPPP PPNNRGTKRE QRRPGGERGD RYETTSDQGS RGHDATGNSG AEGARSQSGD RYGRSALRDD DSESDEEAAP RRSRKR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.