Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014881.1-P | Field mustard | nucleus | 78.29 | 85.17 |
| CDX98205 | Canola | nucleus | 73.06 | 84.74 |
| Bra010767.1-P | Field mustard | nucleus | 82.25 | 82.38 |
| CDX77591 | Canola | nucleus | 72.58 | 76.97 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 77.18 | 74.24 |
| VIT_10s0003g04600.t01 | Wine grape | nucleus | 65.29 | 61.22 |
| KRH11760 | Soybean | nucleus | 65.61 | 59.91 |
| KRH36762 | Soybean | nucleus | 64.5 | 59.77 |
| Solyc02g070240.2.1 | Tomato | nucleus | 63.23 | 59.46 |
| GSMUA_Achr9P30440_001 | Banana | nucleus | 61.01 | 58.6 |
| Solyc02g021760.2.1 | Tomato | nucleus | 63.55 | 58.2 |
| Zm00001d014378_P001 | Maize | cytosol, nucleus, peroxisome | 57.21 | 56.41 |
| GSMUA_Achr6P19820_001 | Banana | nucleus | 61.81 | 56.36 |
| EER88812 | Sorghum | cytosol, nucleus, peroxisome | 57.37 | 56.12 |
| HORVU7Hr1G106340.5 | Barley | cytosol | 56.42 | 54.85 |
| TraesCS7D01G450100.1 | Wheat | nucleus | 56.26 | 54.62 |
| TraesCS7A01G461800.1 | Wheat | nucleus | 56.1 | 54.46 |
| Zm00001d036594_P001 | Maize | cytosol, nucleus, peroxisome | 55.63 | 54.25 |
| TraesCS7B01G363200.2 | Wheat | nucleus | 56.1 | 54.21 |
| Os06t0677700-00 | Rice | cytosol, nucleus, plasma membrane | 57.05 | 52.48 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 21.24 | 50.38 |
| Zm00001d014379_P001 | Maize | nucleus | 18.54 | 47.56 |
| Zm00001d036595_P001 | Maize | nucleus | 18.38 | 46.22 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 15.21 | 21.62 |
Protein Annotations
| MapMan:16.2.1.2.5 | Gene3D:3.10.590.10 | Gene3D:4.10.1000.10 | EntrezGene:839925 | UniProt:A9LNK9 | ProteinID:AAF19746.1 |
| ProteinID:AAF19747.1 | ProteinID:AEE31221.1 | ArrayExpress:AT1G30460 | EnsemblPlantsGene:AT1G30460 | RefSeq:AT1G30460 | TAIR:AT1G30460 |
| RefSeq:AT1G30460-TAIR-G | EnsemblPlants:AT1G30460.1 | TAIR:AT1G30460.1 | EMBL:AY140901 | Unigene:At.40546 | Symbol:CPSF30 |
| EMBL:EU250988 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0004521 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005737 | GO:GO:0005847 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0006396 | GO:GO:0006397 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0006979 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009626 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0031124 | GO:GO:0034052 | GO:GO:0043068 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090502 |
| GO:GO:1900363 | GO:GO:2000031 | InterPro:IPR000571 | InterPro:IPR007275 | RefSeq:NP_174334.2 | PFAM:PF04146 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020094 | PO:PO:0025022 | PFscan:PS50103 | PFscan:PS50882 |
| PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | SMART:SM00356 | SUPFAM:SSF90229 | UniParc:UPI00005DC1C3 | InterPro:YTH_domain |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
Coordinates
chr1:-:10770813..10775428
Molecular Weight (calculated)
70018.8 Da
IEP (calculated)
6.143
GRAVY (calculated)
-0.941
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.