Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G04885.1 | KRH11760 | AT1G30460.1 | 18479511 |
| AT4G04885.1 | KRH36762 | AT1G30460.1 | 18479511 |
| AT4G04885.1 | KRG91241 | AT4G04885.1 | 18479511 |
| AT4G04885.1 | KRH35569 | AT4G04885.1 | 18479511 |
| AT4G04885.1 | KRH35574 | AT4G04885.1 | 18479511 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35569 | Soybean | cytosol | 48.14 | 21.04 |
| KRG91241 | Soybean | nucleus | 47.64 | 20.49 |
| CDY16640 | Canola | nucleus | 38.96 | 20.28 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 37.72 | 19.69 |
| AT4G04885.1 | Thale cress | nucleus | 38.21 | 19.06 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 36.72 | 18.0 |
| CDX94585 | Canola | nucleus | 33.75 | 17.89 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 41.94 | 17.55 |
| Solyc12g094490.1.1 | Tomato | nucleus | 38.21 | 15.79 |
| PGSC0003DMT400075619 | Potato | nucleus | 37.97 | 15.68 |
| Os08t0187700-01 | Rice | cytosol | 32.26 | 13.39 |
| TraesCS7A01G294500.5 | Wheat | nucleus | 30.27 | 13.08 |
| Zm00001d049442_P009 | Maize | nucleus | 31.27 | 13.03 |
| TraesCS7D01G290300.2 | Wheat | nucleus | 30.02 | 12.98 |
| Zm00001d000023_P004 | Maize | nucleus | 31.02 | 12.97 |
| OQU80002 | Sorghum | nucleus | 30.27 | 12.77 |
| HORVU7Hr1G069840.2 | Barley | plastid | 29.78 | 12.22 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 29.53 | 11.92 |
| KRH32653 | Soybean | nucleus | 24.81 | 10.26 |
| KRG96135 | Soybean | nucleus | 22.33 | 9.03 |
| KRG96139 | Soybean | nucleus | 21.59 | 8.45 |
| KRH67849 | Soybean | nucleus | 21.59 | 8.41 |
Protein Annotations
| EMBL:ACUP02006692 | EnsemblPlants:KRH35574 | EnsemblPlantsGene:GLYMA_10G251200 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR15921 | ProteinID:KRH35573.1 | ProteinID:KRH35574 | ProteinID:KRH35574.1 |
| ScanProsite:PS00028 | UniParc:UPI0006EE0368 | UniProt:A0A0R0HYV7 | MapMan:16.2.1.5.2 | : | : |
Description
hypothetical protein
Coordinates
chr10:+:47928806..47932159
Molecular Weight (calculated)
45528.6 Da
IEP (calculated)
7.798
GRAVY (calculated)
-0.712
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLCQSKMPA RDGVLEMGRA RSLTIPPVDN IRNTDINPYL VRPTSFEIRP STNLNVTRPP TLNPITPLQK RVRNQFEATH TSDPIVNHVN KSSFMPEQSF
101: DRIENKDASI SKIHQLPNQH PGLISSNQQN HGQAPQLQFF PSQDPTPSQF SPGSSLQLHD ASISTAMSNP LHGIQFPSPV QSFANNPFIR YTSLISSLMS
201: QGVISLANQL PAQDSIGTEF NPDILKVRHE SPANALYRDL PRQCKTCGLR FRCQEKHSSH MDWHVTKNRM SKSCKQKPSR KWFASLKLWL SGAEALGTES
301: VPHFLATESI DYEERKDHEE FAVPTEEDQS TCALCGESFD EFYSDEMEEW MYRGAAYLNA PARKTSAGMD RSQLGPIIHA KCRSDSNLQC ANEEDTRRKR
401: MRS
101: DRIENKDASI SKIHQLPNQH PGLISSNQQN HGQAPQLQFF PSQDPTPSQF SPGSSLQLHD ASISTAMSNP LHGIQFPSPV QSFANNPFIR YTSLISSLMS
201: QGVISLANQL PAQDSIGTEF NPDILKVRHE SPANALYRDL PRQCKTCGLR FRCQEKHSSH MDWHVTKNRM SKSCKQKPSR KWFASLKLWL SGAEALGTES
301: VPHFLATESI DYEERKDHEE FAVPTEEDQS TCALCGESFD EFYSDEMEEW MYRGAAYLNA PARKTSAGMD RSQLGPIIHA KCRSDSNLQC ANEEDTRRKR
401: MRS
001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
Arabidopsis Description
PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.