Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G294500.5 | Wheat | nucleus | 91.78 | 98.18 |
| TraesCS7D01G290300.2 | Wheat | nucleus | 91.08 | 97.53 |
| HORVU7Hr1G069840.2 | Barley | plastid | 88.08 | 89.51 |
| Os08t0187700-01 | Rice | cytosol | 67.13 | 69.0 |
| OQU80002 | Sorghum | nucleus | 61.62 | 64.4 |
| Zm00001d000023_P004 | Maize | nucleus | 61.42 | 63.59 |
| Zm00001d049442_P009 | Maize | nucleus | 61.12 | 63.08 |
| VIT_18s0086g00630.t01 | Wine grape | cytosol | 4.11 | 58.57 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 30.16 | 36.62 |
| VIT_18s0086g00620.t01 | Wine grape | extracellular | 5.01 | 36.5 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 27.86 | 36.01 |
| CDX94585 | Canola | nucleus | 27.35 | 35.92 |
| CDY16640 | Canola | nucleus | 27.56 | 35.53 |
| AT4G04885.1 | Thale cress | nucleus | 28.16 | 34.78 |
| Bra004171.1-P | Field mustard | nucleus | 7.62 | 33.93 |
| KRH35569 | Soybean | cytosol | 29.86 | 32.32 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 31.16 | 32.29 |
| PGSC0003DMT400075619 | Potato | nucleus | 31.36 | 32.07 |
| Solyc12g094490.1.1 | Tomato | nucleus | 31.26 | 32.0 |
| KRG91241 | Soybean | nucleus | 29.86 | 31.8 |
| KRH35574 | Soybean | nucleus | 11.92 | 29.53 |
| CDY36205 | Canola | nucleus | 9.92 | 23.68 |
| CDX96143 | Canola | nucleus | 9.72 | 23.66 |
| AT5G43620.1 | Thale cress | nucleus | 9.62 | 23.41 |
| AT1G66500.1 | Thale cress | nucleus | 9.32 | 22.36 |
| TraesCS4B01G012000.1 | Wheat | cytosol | 15.33 | 18.55 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G181900.3 | EnsemblPlantsGene:TraesCS7B01G181900 | Gene3D:1.25.40.90 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | InterPro:RNA_pol_II-bd |
| InterPro:Znf_C2H2_type | PANTHER:PTHR15921 | PFAM:PF04818 | PFscan:PS51391 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:16.2.1.5.2 | : | : |
Description
No Description!
Coordinates
chr7B:-:278930324..278937862
Molecular Weight (calculated)
110648.0 Da
IEP (calculated)
7.026
GRAVY (calculated)
-0.620
Length
998 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRGEIGRRR SGKGSHDLPV LQIPNQSQLL PAWLGFASLP HASSSSPSSQ TLARAALSPE TLDLPMASAA AAAPVVGQVV ERFRARLREE AGEEPGAAAV
101: VGVYKEALAE LTFNCKPIIT ELTIIAGQHA ALAARGIADA ICARILEVPV EQKLPSLYLL DSIVKNIGRE YVEDFATRLQ KVFCFAYREV HPKQHPAMRH
201: LFRTWSQVFP SSVLQGIEDE LQFSPSENKC PATTTIPRQS ESLSPRPSHG IHVNPEYLEA QHQLKNGTKV DQLATRGRQM LDVVEDHING LTTNSLRGFP
301: STSSKLQRSM ILYTENPDQQ ETFQSRIGLI RRDMSRSPPP DVLPRNASPK RPLEMPRLSH SVLGHDPRRL PDRNGWFERQ RAFEDSAQRP SMSTLDEEYR
401: KQSARELIDA YGNSQGNDAD DRLPKMQRLE SNGMASRSSA QKWLTSEEEE YTWEDMRPTL SQNRNNIPSL PSSETLRAGF PGPNTGQLDS DIGMRSWRSQ
501: APRPALNLED RTGHVDIATS RRYPGNFGLH NGAISEYHSS ENTLDPGRIL AMSAPPWQQT NGLPLRIQAP QPSSTLNRSA LPTDVEMPVK MLATGGPYDA
601: MHVDLPLTNR SSPAPAPIEW PLHHHSQPPH NTKDIRGATD SLEVRPFIRH GVNSSVFVPR HLYDALDRKT VSTGNLAQPP YQHPDLLSSS QQNQGTNFGN
701: QSQPHDVPQF HPHSHSHPPE TFRSFAPSMP IAPPQNRFQG QGGSAAVPPV TPLPNTFSVT PTVQPYGVSS VSSFALPPLH RGLPPASLQM GPSSSQVGGP
801: TTYFSGILSN LMNHGVITLE PSSQPQDSVG VDFNVDLKVW NESVINALYQ DLHRQCKTCG LRFKCQEEHR AHMDWHVTKN RNSKNRKQSS RKYFVTVGEW
901: FRAAETVGND GVPSFELTEP IPDRNEEKEM AVPADENQTT CALCQEPFED FYSDETEEWM YKGAVYMNAP DGNIVGLQRS HLGPIVHSKC RSGPSNIS
101: VGVYKEALAE LTFNCKPIIT ELTIIAGQHA ALAARGIADA ICARILEVPV EQKLPSLYLL DSIVKNIGRE YVEDFATRLQ KVFCFAYREV HPKQHPAMRH
201: LFRTWSQVFP SSVLQGIEDE LQFSPSENKC PATTTIPRQS ESLSPRPSHG IHVNPEYLEA QHQLKNGTKV DQLATRGRQM LDVVEDHING LTTNSLRGFP
301: STSSKLQRSM ILYTENPDQQ ETFQSRIGLI RRDMSRSPPP DVLPRNASPK RPLEMPRLSH SVLGHDPRRL PDRNGWFERQ RAFEDSAQRP SMSTLDEEYR
401: KQSARELIDA YGNSQGNDAD DRLPKMQRLE SNGMASRSSA QKWLTSEEEE YTWEDMRPTL SQNRNNIPSL PSSETLRAGF PGPNTGQLDS DIGMRSWRSQ
501: APRPALNLED RTGHVDIATS RRYPGNFGLH NGAISEYHSS ENTLDPGRIL AMSAPPWQQT NGLPLRIQAP QPSSTLNRSA LPTDVEMPVK MLATGGPYDA
601: MHVDLPLTNR SSPAPAPIEW PLHHHSQPPH NTKDIRGATD SLEVRPFIRH GVNSSVFVPR HLYDALDRKT VSTGNLAQPP YQHPDLLSSS QQNQGTNFGN
701: QSQPHDVPQF HPHSHSHPPE TFRSFAPSMP IAPPQNRFQG QGGSAAVPPV TPLPNTFSVT PTVQPYGVSS VSSFALPPLH RGLPPASLQM GPSSSQVGGP
801: TTYFSGILSN LMNHGVITLE PSSQPQDSVG VDFNVDLKVW NESVINALYQ DLHRQCKTCG LRFKCQEEHR AHMDWHVTKN RNSKNRKQSS RKYFVTVGEW
901: FRAAETVGND GVPSFELTEP IPDRNEEKEM AVPADENQTT CALCQEPFED FYSDETEEWM YKGAVYMNAP DGNIVGLQRS HLGPIVHSKC RSGPSNIS
001: MENPRRPFDR SRDPGPMKKP RLSEESIRPV NSNARQFLSQ RTLGTATAVT VPPASSRFRV SGRETESSIV SDPSREAYQP QPVHPHYELV NQYKSALAEL
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
Arabidopsis Description
ENTH/VHS family protein [Source:TAIR;Acc:AT2G36480]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.