Factsheet for TraesCS3B01G088300.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G258200.3
TraesCS4B01G056200.1
TraesCS4B01G094500.1
TraesCS4D01G056600.1
TraesCS4D01G091300.1
TraesCS7A01G294500.5
TraesCS7A01G461800.1
TraesCS7B01G181900.3
TraesCS7B01G363200.2
TraesCS7D01G290300.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	TraesCS7A01G461800.1	AT1G30460.1	18479511
AT1G17760.1	TraesCS7B01G363200.2	AT1G30460.1	18479511
AT1G17760.1	TraesCS7D01G450100.1	AT1G30460.1	18479511
AT1G17760.1	TraesCS7A01G461800.1	AT1G30460.1	20214900
AT1G17760.1	TraesCS7B01G363200.2	AT1G30460.1	20214900
AT1G17760.1	TraesCS7D01G450100.1	AT1G30460.1	20214900
AT1G17760.1	TraesCS7A01G294500.5	AT1G66500.1	18479511
AT1G17760.1	TraesCS7B01G181900.3	AT1G66500.1	18479511
AT1G17760.1	TraesCS7D01G290300.2	AT1G66500.1	18479511
AT1G17760.1	TraesCS4B01G094500.1	AT1G71800.1	12379796
AT1G17760.1	TraesCS4D01G091300.1	AT1G71800.1	12379796
AT1G17760.1	TraesCS4B01G094500.1	AT1G71800.1	18479511
AT1G17760.1	TraesCS4D01G091300.1	AT1G71800.1	18479511
AT1G17760.1	TraesCS7A01G294500.5	AT5G43620.1	18479511
AT1G17760.1	TraesCS7B01G181900.3	AT5G43620.1	18479511
AT1G17760.1	TraesCS7D01G290300.2	AT5G43620.1	18479511
AT1G17760.1	TraesCS4A01G258200.3	AT5G58040.1	18479511
AT1G17760.1	TraesCS4B01G056200.1	AT5G58040.1	18479511
AT1G17760.1	TraesCS4D01G056600.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G073700.1	Wheat	nucleus	97.03	99.31
TraesCS3A01G074000.1	Wheat	nucleus	96.23	98.48
HORVU3Hr1G013370.4	Barley	plastid	95.42	89.96
Os12t0571900-01	Rice	cytosol	80.73	81.94
KXG22737	Sorghum	cytosol	77.09	76.27
Zm00001d038093_P007	Maize	nucleus	76.68	76.17
GSMUA_Achr9P17150_001	Banana	plastid	68.06	64.09
Solyc10g050540.1.1	Tomato	nucleus	62.8	62.89
KRG94131	Soybean	cytosol, nucleus	62.26	62.52
CDX96753	Canola	nucleus	58.22	59.5
Bra016588.1-P	Field mustard	nucleus	56.47	57.87
CDX83892	Canola	nucleus	57.82	57.35
AT1G17760.1	Thale cress	nucleus	56.47	57.08
VIT_11s0065g00710.t01	Wine grape	cytosol	64.29	52.71

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0042868	GO:GO:0045892	GO:GO:0060968
InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF05843	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR19980	SMART:SM00386	SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS3B01G088300	EnsemblPlants:TraesCS3B01G088300.3	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:56340438..56349980

Molecular Weight (calculated)

83864.0 Da

IEP (calculated)

8.106

GRAVY (calculated)

-0.394

Length

742 amino acids

Sequence
(BLAST)

001: MDIYNVEAAE ILAHETLNLP IGEAAPIYEK LLATFPTAAK YWKQYVESYI VTNDEETAKQ IFSRCLLTCP HINLWRCYIN FVKKVNSKRG SEGLEETKKA
101: FDFMLNYVGN DVASGPVWME YIAFLKSMPV MTPQEESHRM TTIRKVYQKA ILVPTSHVEQ LWKDYDNFEN SVSRTLAKGL LSEYQPKFNS AKAVYRERKK
201: YIDDIDWSML ATPSTGSYKA FQQHLSISES RSVFEKEEQQ CLAWKRLLTF EKGNPQRIDV TAANRRITFT YEQCLMYLYH HPDVWYDYAT WHAKNGSTDS
301: AIKIFQRAVK ALPGSEVLKY AFAELEESVG AIQPAKTIYE SLIAENASMS SLAHIQFIRF LRRTEGIEAA RKYFLEVRKL PSCTYHVYVA YATMSFCLDK
401: DAKVAQNVFE VGLKRFMQEP GYVLEYADFL CRLNDDRNVR ALFERALSLL PPEESVEVWK RFAQFEQIYG DLSSMLKVEQ RRKEALSRTS EDVVSSLENT
501: LYDVVSRYNY MDLWPCSSKE LDYLSRQEWL AKNMSKKADR SVMLTSGGGS TLDKGTVGVG ANAKLLPQST KVVRPETSRM VIYDPRQMKG PVISATSSGY
601: TKEVDEIFKM LSPPLMSFIT NLPAIEGPSP DIDIVLSVLL QSTLPTGHDV GKPSAPVPGP ATSDLSGPRN QNGSVRRPPK RKAVERQEEE DAAAAAQSRA
701: MPDIFRLRQI QRSRGGGPAQ SGSAAMSSGS MFSGEQSANS SS

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.