CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91748
KRH11760
KRH12930
KRH35025
KRH36762
KRH37905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	KRH11760	AT1G30460.1	18479511
AT1G17760.1	KRH36762	AT1G30460.1	18479511
AT1G17760.1	KRH11760	AT1G30460.1	20214900
AT1G17760.1	KRH36762	AT1G30460.1	20214900
AT1G17760.1	KRG91748	AT1G71800.1	12379796
AT1G17760.1	KRH35025	AT1G71800.1	12379796
AT1G17760.1	KRG91748	AT1G71800.1	18479511
AT1G17760.1	KRH35025	AT1G71800.1	18479511
AT1G17760.1	KRH12930	AT5G58040.1	18479511
AT1G17760.1	KRH37905	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g050540.1.1	Tomato	nucleus	74.02	73.82
CDX96753	Canola	nucleus	67.79	69.01
AT1G17760.1	Thale cress	nucleus	68.2	68.66
Bra016588.1-P	Field mustard	nucleus	65.63	66.99
Os12t0571900-01	Rice	cytosol	66.17	66.89
CDX83892	Canola	nucleus	67.66	66.84
GSMUA_Achr9P17150_001	Banana	plastid	69.69	65.36
KXG22737	Sorghum	cytosol	65.63	64.67
Zm00001d038093_P007	Maize	nucleus	64.95	64.26
TraesCS3D01G073700.1	Wheat	nucleus	62.38	63.59
TraesCS3A01G074000.1	Wheat	nucleus	62.25	63.45
VIT_11s0065g00710.t01	Wine grape	cytosol	77.27	63.09
TraesCS3B01G088300.3	Wheat	nucleus	62.52	62.26
HORVU3Hr1G013370.4	Barley	plastid	62.38	58.58

Protein Annotations

Gene3D:1.25.40.1040	EntrezGene:100799377	MapMan:16.2.1.3.1	EMBL:ACUP02011767	EnsemblPlantsGene:GLYMA_19G064500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006379	GO:GO:0006396
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031047
GO:GO:0031123	GO:GO:0042868	GO:GO:0045892	GO:GO:0060968	InterPro:HAT	UniProt:I1N761
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRG94131	ProteinID:KRG94131	ProteinID:KRG94131.1
PFAM:PF05843	PFAM:PF13428	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19980	SMART:SM00386
SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000294AD32
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:15290744..15318965

Molecular Weight (calculated)

83150.0 Da

IEP (calculated)

7.808

GRAVY (calculated)

-0.441

Length

739 amino acids

Sequence
(BLAST)

001: MDKPSGGDKY NVETAEILAN EAQHLPVAEA TPIYEQLLLL FPTAAKFWRQ YVEAHMAANN DDATKQIFSR CLLNCLQIPL WRCYIRFIRK VNDKKGMEGQ
101: EETRKAFDFM LNYVGADIAS GPVWMEYIAF LKSLPAINAQ EESHRMTTMR KVYQKAIVTP THHIEQLWKD YENFENSVSR QLAKGLISEY QPKYNSARAV
201: YRERKKYVDE IDWNMLAVPP TGSYKEEMQW MAWKRLLSFE KGNPQRIDTA SSNKRIIFTY EQCLMHMYHY PDIWYDYATW HAKGGLIDSA IKVFQRALKA
301: LPDSEMLRYA YAELEESRGA IQAAKKIYES VMGDGDSATT LSHIQFIRFL RRTEGVEAAR KYFLDARKSP SCTYHVYVAY ATMAFCLDKD PKMAHNVFEA
401: GLKRFMHEPV YILEYADFLI RLNDDQNIRA LFERALSSLP PEESVEVWKK FTKFEQTYGD LASMLKVEQR RKEALSGAED GTALESSLQD IVSRYSFMDL
501: WPCSSNDLDH LARQQWLAKN INKKVEKSIL PNGTTLLDKT SMASISTMPS KIVYPDTSKM VIYDPKHTPG AGTNAFDEIL KATPPALVSF LANLPAVEGP
601: MPNVDIVLSI CLQSDLPTGQ SVKTGIPTQV QSGKAGIPAL LPAGSAPAAA ASELSGSSKS HPAPSGGVSL KPGSNRQYGK RKEPDRQDED DTTTVQSQPL
701: PRDAFRIRQY QKARASSASQ TGSVSYGSAF SGDLSGSTG

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.