Factsheet for AT1G17760.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016588.1-P	Field mustard	nucleus	87.19	88.4
CDX96753	Canola	nucleus	86.65	87.6
CDX83892	Canola	nucleus	86.65	85.03
KRG94131	Soybean	cytosol, nucleus	68.66	68.2
Solyc10g050540.1.1	Tomato	nucleus	64.44	63.83
GSMUA_Achr9P17150_001	Banana	plastid	64.17	59.77
Os12t0571900-01	Rice	cytosol	58.58	58.82
Zm00001d038093_P007	Maize	nucleus	58.99	57.97
TraesCS3D01G073700.1	Wheat	nucleus	57.08	57.79
TraesCS3A01G074000.1	Wheat	nucleus	56.95	57.66
KXG22737	Sorghum	cytosol	58.86	57.6
TraesCS3B01G088300.3	Wheat	nucleus	57.08	56.47
VIT_11s0065g00710.t01	Wine grape	cytosol	68.66	55.69
HORVU3Hr1G013370.4	Barley	plastid	56.95	53.11

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	EntrezGene:838354	ProteinID:AAF99818.1	ProteinID:AEE29633.1	EMBL:AF515697
ArrayExpress:AT1G17760	EnsemblPlantsGene:AT1G17760	RefSeq:AT1G17760	TAIR:AT1G17760	RefSeq:AT1G17760-TAIR-G	EnsemblPlants:AT1G17760.1
TAIR:AT1G17760.1	Unigene:At.28561	EMBL:BT002320	Symbol:CSTF77	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006379	GO:GO:0006396	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031047	GO:GO:0031123
GO:GO:0042868	GO:GO:0045892	GO:GO:0060968	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	RefSeq:NP_173218.2	PFAM:PF05843	PFAM:PF13428	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR19980	UniProt:Q8GUP1	SMART:SM00386	SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00000AE1DE	SEG:seg	:	:

Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]

Coordinates

chr1:-:6110107..6116617

Molecular Weight (calculated)

82653.9 Da

IEP (calculated)

8.261

GRAVY (calculated)

-0.452

Length

734 amino acids

Sequence
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.